Pairwise Alignments

Query, 1134 a.a., Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) from Xanthomonas campestris pv. campestris strain 8004

Subject, 1122 a.a., exonuclease V (RecBCD complex), gamma chain from Escherichia coli BL21

 Score =  432 bits (1112), Expect = e-125
 Identities = 343/1119 (30%), Positives = 527/1119 (47%), Gaps = 133/1119 (11%)

Query: 10   RLYPSNALDTLAALLAEELRRPVPEQPVLQPEVVLIPQVAMRRWLQSTLAAEHGVAANLE 69
            R+Y SN LD L AL+   + R   + P  +PE++L+    M +WLQ TL+ + G+AAN++
Sbjct: 3    RVYHSNRLDVLEALMEFIVERERLDDP-FEPEMILVQSTGMAQWLQMTLSQKFGIAANID 61

Query: 70   FLTPGEFVARALERNLG--PADDDLDMATTQWRLYQTLQGELGSDAALAPLAGYLAD-GD 126
            F  P  F+     R L   P +   +  +  W+L  TL  +L        L  YL D  D
Sbjct: 62   FPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKL-MTLLPQLLEREDFTLLRHYLTDDSD 120

Query: 127  ALKPWALAGELGSVFEKYQAWRRDWLLRWESG------ADADDPQARLWRSIAG------ 174
              K + L+ +   +F++Y  +R +WL +WE+G       +A   QA LW+++        
Sbjct: 121  KRKLFQLSSKAADLFDQYLVYRPEWLAQWETGHLVEGLGEAQAWQAPLWKALVEYTHELG 180

Query: 175  -GRQYRARRIGQYLDRYARPDGPLPQGLPKRLFAFAILNVSPDVLRVLATQARVGTLHFY 233
              R +RA    ++++         P GLP R+F   I  + P  L+ L    +   +H  
Sbjct: 181  QPRWHRANLYQRFIETLESAT-TCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLL 239

Query: 234  LPTPTQGYWGDLQT-------LWQRRR---EGGAVALF-------------AEQVQENPL 270
               P + YWGD++        L ++RR   E   + LF              EQ   NPL
Sbjct: 240  FTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPL 299

Query: 271  LQAWGAAGRDFMALVGDYEVVHPLAEIAAYADPLDAGRRTLAEGGLGDSLLRRMQSDLFH 330
            L +WG  GRD++ L+ D E      E+ A+ D               D+LL  +QSD+  
Sbjct: 300  LASWGKLGRDYIYLLSDLESSQ---ELDAFVDVTP------------DNLLHNIQSDILE 344

Query: 331  RHAPAVPPV----------LPAVNLHDPSLQVHACHTRLRELQVLHDQLRALLDDARFDP 380
                AV  V             ++  D S+  H CH+  RE++VLHD+L A+L++   DP
Sbjct: 345  LENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEE---DP 401

Query: 381  PLQPREIAVLSPDIDPYVPYLDAVFGGHGSDDGLPYALADASPLASEPLADVFLTLLGLP 440
             L PR+I V+  DID Y P++ AVFG   +D  LPYA++D     S P+ + F++LL LP
Sbjct: 402  TLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLP 461

Query: 441  ISRFGLHEILDLLASAPIAEAAGLDEAGLERLRGWLHGAGARWGLDAVHRRQHQAPGDDA 500
             SRF   ++L LL    +A    + E GL  LR W++ +G RWG+D  + R+ + P    
Sbjct: 462  DSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQ 521

Query: 501  YTWRFALDRLLLGHA-SGAEDDIDGVAPWPQLEGSALAALDTLLRLLRVLDRHQAALAEA 559
            +TWRF L R+LLG+A   A+ +   V P+ +  G     +  L  LL  L+  +  LA+ 
Sbjct: 522  HTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQE 581

Query: 560  MTPVQWRECLLGLLEALIPAAPSAPRAQRALERLRTLIDQ----FARDAVRAEYAGNVPA 615
                +W      +L A        P A+   E   TLI+Q       + + A+Y   VP 
Sbjct: 582  RPLEEWLPVCRDMLNAFF-----LPDAE--TEAAMTLIEQQWQAIIAEGLGAQYGDAVPL 634

Query: 616  EVVRAHFAAVLGESDTRAPLLTGGISFGRMVPMRLLPFRAICLLGMNDGDFPRRDPAAGL 675
             ++R   A  L +       L G ++   ++PMR +PF+ +CLLGMNDG +PR+     L
Sbjct: 635  SLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQ-----L 689

Query: 676  NRLTAELGTERRRHGDRSTREDDRFLFLQLFASAQEVFYLSYLGADARDGTVREPSVLVS 735
              L  +L +++ + GDRS R+DDR+LFL+   SAQ+  Y+SY+G   +D + R PSVLV 
Sbjct: 690  APLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQ 749

Query: 736  ELLGSAAQYHADP--KAIDA----------LVVRHPLQPFAAAAFGAVGEDGADPRRFSY 783
            EL+    Q H  P  +A++           L   H   PF    +   GE      R SY
Sbjct: 750  ELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNY-QPGE------RQSY 802

Query: 784  RRQWRPAVDSLAGQR-----QPLAPWVAGALPADASVLPASVSIDDLRRLFADPAGQFLR 838
             R+W PA  S AG+      QPL              LP +V ++ L+R +A P   F +
Sbjct: 803  AREWLPAA-SQAGKAHSEFVQPL-----------PFTLPETVPLETLQRFWAHPVRAFFQ 850

Query: 839  HRLGMRLPDPAGEDSDLEPLLAPTRGLEQYGLQQQVFEAAL-AGDADGLYERLRARALLP 897
             RL +       E  D EP +    GL +Y + QQ+  A +   DA+ L+ R RA   LP
Sbjct: 851  MRLQVNFRTEDSEIPDTEPFI--LEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLP 908

Query: 898  SGPLGRRQLDERLRQLRPYADVFRQWRGEAPAQSQRLQVEIDGTNVHGRVPGWYANGVGR 957
             G  G    + + ++++  AD  R      P QS  + +  +G  + G +P    +G+ R
Sbjct: 909  YGAFGEIFWETQCQEMQQLAD--RVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLR 966

Query: 958  VQVGALSGRSAIRDGLEWLLLRAAGERVPFVRFFEHDDSLGPHPIDPEPLSQTQARAALG 1017
             +   LS    ++  LE L+  A+G      R F   D     P    PL+  QA   L 
Sbjct: 967  WRPSLLSVAQGMQLWLEHLVYCASGGNGE-SRLFLRKDGEWRFP----PLAAEQALHYLS 1021

Query: 1018 ELLQLYRQGLQTPLAFAPYSSWKYHQAARNDELDKAIKD 1056
            +L++ YR+G+  PL   P S   + +   + + D  + D
Sbjct: 1022 QLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDD 1060