Pairwise Alignments

Query, 745 a.a., Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) from Xanthomonas campestris pv. campestris strain 8004

Subject, 691 a.a., ATP-dependent DNA helicase and dsDNA/ssDNA exonuclease, ssDNA endonuclease from Pseudomonas putida KT2440

 Score =  291 bits (744), Expect = 1e-82
 Identities = 270/765 (35%), Positives = 335/765 (43%), Gaps = 156/765 (20%)

Query: 2   NHPNLLTALN---QAGALRTLDLAFAQSLQRLAPDTDPQVLAGAALASLAVTSGHAGLD- 57
           N  +LL  L+   + G LR LD AF   L+  AP +DP +L  AALAS  +  GH  LD 
Sbjct: 26  NSADLLQLLDRWVERGWLRALDRAFVSFLEERAPGSDPLLLLAAALASHQLGHGHVCLDL 85

Query: 58  -------------PTRAAMLLDAREGPSPALP--DPTDWQRTLAASRWV---DQPNPQEP 99
                        P     L+     PS  L   D   W + ++AS  V   D P  Q  
Sbjct: 86  QQTLAEPDFALSLPPEGDALIGPLLLPSQLLANLDLNAWLQRISASPLVAAGDTPGQQAR 145

Query: 100 AAADCPLVLEHGLLYLRRYREYERRLALGL-QRIAAHSPPPFAAATLAPLFEQLFPQASP 158
                PLV     LYLRRY  YERR+   L QR++    PP   A L     QLF     
Sbjct: 146 -----PLVRSGERLYLRRYWSYERRIDQALRQRLSQAEAPP---ADLPERLAQLF----- 192

Query: 159 LPQGEGARRAGEGTGLPEPSIYQDGTNPPEPSHHQDHQAQAAALALRRTLLLVTGGPGTG 218
               EG   AG+                       D Q  A ALA R    ++TGGPGTG
Sbjct: 193 ----EGGAPAGQ----------------------VDWQKLACALATRAGFSIITGGPGTG 226

Query: 219 KTTTIARLLLLRIAQAHASNTPAPRIALAAPTGRAAERMAESLRAAVARAIANGIDPALA 278
           KTTT+ RLL L  A A     P  RI LAAPTG+AA R+ ES+   V R     +   + 
Sbjct: 227 KTTTVVRLLALLQAPAVEQGRPL-RIRLAAPTGKAAARLTESIGQQVERL---QVSAEVR 282

Query: 279 DALPTGASTLHRLLGVIPDSPQFRHTADNPLPFDLIVVDEASMVDLPLMCKLVEAVADGT 338
             +PT  ST+HRLLG  P S  FRH A NPLP D++VVDEASM+DL +M  L++A+    
Sbjct: 283 GQIPTEVSTVHRLLGSRPGSRHFRHHAGNPLPLDVLVVDEASMIDLEMMANLLDALPPRA 342

Query: 339 QLILLGDADQLPSVEAGDVLAAILQAAGPGDTLQPQDADALQPLLGSAPPGSTPASIQTG 398
           +L+LLGD DQL SVEAG VL  + + A  G    P  A  LQ + G +  GS        
Sbjct: 343 RLVLLGDKDQLASVEAGAVLGDLCRDAEEG-FYSPATAAWLQQVSGESLAGS-------- 393

Query: 399 GHTISHTHTGGLAGHRVHLLRGYRQADNFALTPLADAIRTSDADTALALLRSGELAGVHF 458
           G          LA   V L    R  +   +  LA  +   DA  A  LL +   A VH 
Sbjct: 394 GLKAGDEQRHPLAQQVVMLRFSRRFGEGSGIGQLARLVNRQDAHAARNLL-AAPPADVHS 452

Query: 459 ----HEDGE-------DPLALGRDA---------LLAHWRALADA--HDPA------AAL 490
               HE          D L  G D           L  +R   D    DPA        L
Sbjct: 453 LSLKHEQDRAFDRLLLDGLNRGTDGPQGYRSYLRTLGRYRPALDTAFDDPAWEQWAGKVL 512

Query: 491 RDAARLRLLTAVRAGPQGARGLNARIEQLLAESGSGARRLGSASPWFQGRLLLITENSYR 550
           R     +LL AVR G  G  GLN R+ ++L  +G     + S  PW++GR +L+T N Y 
Sbjct: 513 RSFEDFQLLCAVRRGAWGVEGLNERVARVLHNAG----LIDSQQPWYEGRPVLVTRNDYG 568

Query: 551 HGLFNGDVGICLRSEASPFSERSDTNAPSERSDASTVTARSDAAASSGPSHSIGTANRAD 610
            GL NGD+GI LR              P E                              
Sbjct: 569 LGLMNGDIGIALR-------------LPDE---------------------------HGQ 588

Query: 611 PVAERRAQGPLVAWFEGDGDSQVRGFHPAALPAHESAFAMTVHKAQGSEFDTVWLQLPTR 670
           P+         VA+   DG   VR   P+ L   E+ FAMTVHK+QGSEF    L LP  
Sbjct: 589 PLLR-------VAFPRNDGSGGVRFVLPSRLNEVETVFAMTVHKSQGSEFSHTALVLPEA 641

Query: 671 DARVLSRELLYTGITRARRALHLA-GSEAALRAALARHAARISGL 714
              VL++EL+YTGITRA+    L    +     A+AR   RISGL
Sbjct: 642 LNPVLTKELVYTGITRAKHCFSLVEPRQGIFEEAVARKVRRISGL 686