Pairwise Alignments

Query, 745 a.a., Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) from Xanthomonas campestris pv. campestris strain 8004

Subject, 608 a.a., exonuclease V (RecBCD complex), alpha chain from Escherichia coli BL21

 Score =  278 bits (710), Expect = 8e-79
 Identities = 237/712 (33%), Positives = 323/712 (45%), Gaps = 138/712 (19%)

Query: 16  LRTLDLAFAQSLQRLAPDTDPQVLAGAALASLAVTSGHAGLDPTRAAMLLDAREGPSPAL 75
           LR LD+ FA ++   A D  P V   AAL S     GH  L  +R    L+  E   P L
Sbjct: 16  LRPLDVQFALTV---AGDEHPAVTLAAALLSHDAGEGHVCLPLSR----LENNEASHPLL 68

Query: 76  P-------DPTDWQRTLAASRWVDQPNPQEPAAADCPLVLEHGLLYLRRYREYERRLALG 128
                   +  +W+  L AS+ V + +  EP     P++L    LYL R    ER +A  
Sbjct: 69  ATCVSEIGELQNWEECLLASQAVSRGD--EPT----PMILCGDRLYLNRMWCNERTVARF 122

Query: 129 LQRIAAHSPPPFAAATLAPLFEQLFPQASPLPQGEGARRAGEGTGLPEPSIYQDGTNPPE 188
              +  +       A LA   ++LFP +  +                             
Sbjct: 123 FNEV--NHAIEVDEALLAQTLDKLFPVSDEI----------------------------- 151

Query: 189 PSHHQDHQAQAAALALRRTLLLVTGGPGTGKTTTIARLLLLRIAQAHASNTPAPRIALAA 248
                + Q  AAA+AL R + +++GGPGTGKTTT+A+LL   I  A        RI LAA
Sbjct: 152 -----NWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERC---RIRLAA 203

Query: 249 PTGRAAERMAESLRAAVARAIANGIDPALADALPTGASTLHRLLGVIPDSPQFRHTADNP 308
           PTG+AA R+ ESL  A+ +     +       +P  ASTLHRLLG  P S + RH A NP
Sbjct: 204 PTGKAAARLTESLGKALRQL---PLSDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNP 260

Query: 309 LPFDLIVVDEASMVDLPLMCKLVEAVADGTQLILLGDADQLPSVEAGDVLAAILQAAGPG 368
           L  D++VVDEASM+DLP+M +L++A+ D  ++I LGD DQL SVEAG VL  I   A  G
Sbjct: 261 LHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAG 320

Query: 369 DTLQPQDADALQPLLGSAPPGSTPASIQTGGHTISHTHTGGLAGHRVHLLRGYRQADNFA 428
            T   + A  L  L G+  P  T             T    L      L + YR   +  
Sbjct: 321 FT--AERARQLSRLTGTHVPAGT------------GTEAASLRDSLCLLQKSYRFGSDSG 366

Query: 429 LTPLADAIRTSDADTALALLRSGELAGV--HFHEDGEDPLALGRDALLAHWR---ALADA 483
           +  LA AI   D  TA+  +   +   +     + GED +A+  +AL  + R    L   
Sbjct: 367 IGQLAAAINRGD-KTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQAR 425

Query: 484 HDPAAALRDAARLRLLTAVRAGPQGARGLNARIEQLLAESGSGARRLGSASPWFQGRLLL 543
            +P   ++     +LL A+R GP G  GLN RIEQ + +     R     S W++GR ++
Sbjct: 426 AEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRH--PHSRWYEGRPVM 483

Query: 544 ITENSYRHGLFNGDVGICLRSEASPFSERSDTNAPSERSDASTVTARSDAAASSGPSHSI 603
           I  N    GLFNGD+GI L                 +R   + V                
Sbjct: 484 IARNDSALGLFNGDIGIAL-----------------DRGQGTRV---------------- 510

Query: 604 GTANRADPVAERRAQGPLVAWFEGDGDSQVRGFHPAALPAHESAFAMTVHKAQGSEFDTV 663
                               WF    D  ++   P+ LP HE+ +AMTVHK+QGSEFD  
Sbjct: 511 --------------------WF-AMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHA 549

Query: 664 WLQLPTRDARVLSRELLYTGITRARRALHLAGSEAALRAALARHAARISGLA 715
            L LP++   V++REL+YT +TRARR L L   E  L AA+A    R SGLA
Sbjct: 550 ALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLA 601