Pairwise Alignments

Query, 723 a.a., ATP-dependent DNA helicase UvrD/PcrA from Xanthomonas campestris pv. campestris strain 8004

Subject, 728 a.a., DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex from Pseudomonas putida KT2440

 Score =  787 bits (2033), Expect = 0.0
 Identities = 406/728 (55%), Positives = 521/728 (71%), Gaps = 13/728 (1%)

Query: 1   LLDHLNPAQREAVSAPPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFAVTFTNK 60
           LL+ LN AQR+AV+A  G  LVLAGAGSGKTRVL+HRIAWL +V+    H I +VTFTNK
Sbjct: 9   LLNSLNDAQRQAVAATLGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNK 68

Query: 61  AAGEMRHRTDLQLRNGSRGMWIGTFHGLAHRLLRLHWQDARLPEGFQVMDSDDQLRLVKR 120
           AA EMR R +  L     GMW+GTFHGLAHRLLR HWQ+ARL + FQ++DSDDQ RL+KR
Sbjct: 69  AAAEMRQRIEQLLGINPAGMWVGTFHGLAHRLLRAHWQEARLVQNFQILDSDDQQRLIKR 128

Query: 121 VVQSLELDETKYPPKQMGWWINEQKDEGRRPQHIQPEPNDDWTEVRRQVYAAYQERCDRS 180
           V++ L LDE K+P +Q  W+IN QKDEG RPQHIQ    D +    R+VY AY++ C+R+
Sbjct: 129 VMRELGLDEQKWPARQAQWFINGQKDEGLRPQHIQAG-GDLFLATMREVYTAYEQACERA 187

Query: 181 GLLDFAELLLRAHELLRDTPALLAHYRARFREILVDEFQDTNAIQYAFVRVLAGESGHVF 240
           G++DF+ELLLRA +L RD P LL HY+ RFR +LVDEFQDTNA+QYA++R+LA     + 
Sbjct: 188 GVIDFSELLLRALDLWRDHPGLLEHYQRRFRHVLVDEFQDTNAVQYAWLRLLARGGDSLM 247

Query: 241 VVGDDDQAIYGWRGAKVENVQRFLKDFPGAQTVRLEQNYRSSANILGAANAVIAHNPDRI 300
            VGDDDQ+IYGWRGAK+EN+ ++  DFP A+ +RLEQNYRS+  IL AANA+IA+N  R+
Sbjct: 248 AVGDDDQSIYGWRGAKIENIHQYTADFPDAEMIRLEQNYRSTGGILKAANALIANNSGRL 307

Query: 301 GKQLWTDSGDGDPIDLYAAYNEVDEARYVVERARQWVRDGGSYGEVAVLYRSNAQSRALE 360
           GK+LWTD G+G+P+ LYAAYNE DEARYVVE     V+ G +  E+A+LYRSNAQSR LE
Sbjct: 308 GKELWTDMGEGEPLTLYAAYNEHDEARYVVETIESLVKQGNARNEIAILYRSNAQSRVLE 367

Query: 361 EALIAEQLPYRVYGGMRFFERAEIKDALAYLRMLTNRSDDAAFERAVNTPTRGIGDRTLD 420
           EAL+ E++PYR+YGG RFFERAEIK+A+AYLR++  R +DAA ER +N P RGIG++T++
Sbjct: 368 EALLRERIPYRIYGGQRFFERAEIKNAMAYLRLIEGRGNDAALERVINVPPRGIGEKTVE 427

Query: 421 EVRRLARANALSLWEAAMLCTQENTLAARARNALATFLSLVGQLQAETGEMDLAERIDHV 480
            +R  AR + LS+WEA         L  RA +AL  F+ L+  L A+  +M L       
Sbjct: 428 AIREHARHSQLSMWEAMCQLIAAKALKGRAASALGAFIELIEGLAAKVVDMPLHTMTQTT 487

Query: 481 LMRSGLREHWAKESRGGLDSESRTENLDELVSVASRFTRPDDEDSQGMTELVAFLAYASL 540
           + +SGL  +  +E   G   ++R ENL+ELVS A  F   D++    ++ L AFL +ASL
Sbjct: 488 IEQSGLITYHQEEK--GEKGQARVENLEELVSAARNFESTDED--ADLSPLSAFLGHASL 543

Query: 541 EAGEGQAQAGEEGVQLMTLHSAKGLEFPIVFLVGLEDGLFPSARSLEESGRLEEERRLAY 600
           EAG+ QA   E+ +QLMTLHSAKGLEFP VFLVG+E+GLFP   SLEE GRLEEERRLAY
Sbjct: 544 EAGDTQADEHEDSIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPGRLEEERRLAY 603

Query: 601 VGITRARQKLVLCYAESRRIHGQDNYNVPSRFLREIPRDLLHEVRPKVQVSRTASLGAAR 660
           VGITRA ++LV+ YAE+RR++G + YN  SRF+REIP  L+ EVR    VSR    G A+
Sbjct: 604 VGITRAMRQLVMTYAETRRLYGSETYNKVSRFVREIPAGLVQEVRLSNSVSR--PFGGAK 661

Query: 661 GGP-----VHAVVDAAPIKLGANVEHPKFGGGVVVDYEGAGAHARVQVQFDEVGAKWLVM 715
                    +A +      LG  V+H  FG GV++++EG+GA ARVQV F E G+KWL++
Sbjct: 662 TATNSNLFANASIPQTAFNLGQRVQHAVFGEGVILNFEGSGAQARVQVNFAE-GSKWLML 720

Query: 716 AYANLTVV 723
            YA L  V
Sbjct: 721 GYAKLEAV 728