Pairwise Alignments

Query, 723 a.a., ATP-dependent DNA helicase UvrD/PcrA from Xanthomonas campestris pv. campestris strain 8004

Subject, 806 a.a., ATP-dependent DNA helicase UvrD/PcrA from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  607 bits (1566), Expect = e-178
 Identities = 348/806 (43%), Positives = 480/806 (59%), Gaps = 96/806 (11%)

Query: 1   LLDHLNPAQREAVSAPPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFAVTFTNK 60
           LL  LN  Q  AV  P  H L+LAGAGSGKTRVL  RIAWL +   V   GI AVTFTNK
Sbjct: 14  LLAGLNAEQSAAVLLPAEHALILAGAGSGKTRVLTTRIAWLLQSGQVSPGGILAVTFTNK 73

Query: 61  AAGEMRHRTDLQLRNGSRGMWIGTFHGLAHRLLRLHWQDARLPEGFQVMDSDDQLRLVKR 120
           AA EM  R    L    RGMWIGTFHGL +R LR H + A LP  FQ++D+ DQL  +KR
Sbjct: 74  AAKEMMTRLSAMLPINVRGMWIGTFHGLCNRFLRAHHKLANLPATFQILDTQDQLSAIKR 133

Query: 121 VVQSLELDETKYPPKQMGWWINEQKDEGRRPQHIQPEPNDDWTEVRRQVYAAYQERCDRS 180
           + +   +D+ +YPPKQ+ ++I+  K++G+RP  +     D+ T  + ++YA Y+E+C R 
Sbjct: 134 LCKQFNVDDERYPPKQIQYFISGCKEDGQRPHDVPAR--DEETRKKLELYALYEEQCQRE 191

Query: 181 GLLDFAELLLRAHELLRDTPALLAHYRARFREILVDEFQDTNAIQYAFVRVLAGE----- 235
           G++DF EL+LR++E+LRD   +  HY+ RFR IL+DEFQDTN +QYA++++ +       
Sbjct: 192 GVVDFGELMLRSYEVLRDNDPVREHYQRRFRHILIDEFQDTNRLQYAWIKMFSAPPLEGL 251

Query: 236 --SGH-VFVVGDDDQAIYGWRGAKVENVQRFLKDFPGAQTVRLEQNYRSSANILGAANAV 292
             SG+ VF VGDDDQ+IY +RGA+V N+  F+++F     ++LEQNYRS +NIL +AN +
Sbjct: 252 TPSGNAVFAVGDDDQSIYAFRGARVGNMADFVREFGVRHQIKLEQNYRSVSNILDSANQL 311

Query: 293 IAHNPDRIGKQLWTDSGDGDPIDLYAAYNEVDEARYVVERARQWVRDGGSYGEVAVLYRS 352
           I+HN  R+GK L TD+G G+P+ ++ A ++  EA+++V+  +Q  R+G    E+AVLYRS
Sbjct: 312 ISHNTHRLGKNLRTDAGAGEPVRVFEATSDFAEAQWMVDEMKQLAREGIPRSEMAVLYRS 371

Query: 353 NAQSRALEEALIAEQLPYRVYGGMRFFERAEIKDALAYLRMLTNRSDDAAFERAVNTPTR 412
           NAQSR +E AL    LPYRVYGG+RFFERAEIK ALAYLR+L N  DD +F R VN P R
Sbjct: 372 NAQSRVVETALFNAALPYRVYGGLRFFERAEIKHALAYLRLLENAHDDTSFLRVVNFPPR 431

Query: 413 GIGDRTLDEVRRLARANALSLWEAAMLCTQENTLAARARNALATFLSLVGQLQAETGEMD 472
           GIG R++++++ +AR +  SL +A    T       RA  A+  F + +  ++ +T    
Sbjct: 432 GIGARSIEQLQDVARTSGCSLHDAVSAVT------GRAGVAVGNFAAKIDVMREQTEGRT 485

Query: 473 LAERIDHVLMRSGLREHWAKESRGGLDSESRTENLDELVSVASRFTR------------- 519
           L E I+ VL  SGL EH+    RG  + + R ENL+ELV+ A  F               
Sbjct: 486 LREIIELVLAHSGLIEHY----RGEREGQDRVENLEELVNAAESFVSIEGFGRDAVALPV 541

Query: 520 ----------------------------PDDEDSQGMTELVAFLAYASLEAGEGQAQAGE 551
                                       PD E  + ++ L AFL +A+LE+G+ QAQAG+
Sbjct: 542 DELGKPLTQSPVSQGLDPNLPVVDEPLAPDAETGETLSPLAAFLTHAALESGDNQAQAGQ 601

Query: 552 EGVQLMTLHSAKGLEFPIVFLVGLEDGLFPSARSLEESGRLEEERRLAYVGITRARQKLV 611
           + VQLMT+H+AKGLEF  VF+ G+E+GLFP   S+ +   LEEERRL YV ITRAR++L 
Sbjct: 602 DAVQLMTVHAAKGLEFDCVFITGMEEGLFPHENSMSDRDGLEEERRLMYVAITRARKRLY 661

Query: 612 LCYAESRRIHGQDNYNVPSRFLREIPRDLLHEVRPKVQVSRTASLGAARG---------- 661
           L ++++R +HGQ  YN+ SRF  E+P + L  + P  Q + +A +G   G          
Sbjct: 662 LSHSQTRMLHGQTRYNMKSRFFDELPEECLKWLTPP-QPAWSAPMGGGGGQWQNGRRGFG 720

Query: 662 -----------------GPVHAVVDAAP-------IKLGANVEHPKFGGGVVVDYEGAGA 697
                            G    +   AP       I+ G  V H KFG G V+  EGAG 
Sbjct: 721 GAPAALQPSWSPGFKERGDPKGLGQTAPEPDRGTEIRAGLAVFHNKFGEGKVLAVEGAGD 780

Query: 698 HARVQVQFDEVGAKWLVMAYANLTVV 723
            AR QV F   G KWL ++ A LT +
Sbjct: 781 DARAQVNFTRHGTKWLALSVAKLTPI 806