Pairwise Alignments

Query, 723 a.a., ATP-dependent DNA helicase UvrD/PcrA from Xanthomonas campestris pv. campestris strain 8004

Subject, 720 a.a., DNA-dependent ATPase I and helicase II from Escherichia coli BL21

 Score =  845 bits (2184), Expect = 0.0
 Identities = 428/723 (59%), Positives = 540/723 (74%), Gaps = 8/723 (1%)

Query: 1   LLDHLNPAQREAVSAPPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFAVTFTNK 60
           LLD LN  QREAV+AP  + LVLAGAGSGKTRVL+HRIAWL  V+    + I AVTFTNK
Sbjct: 6   LLDSLNDKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNK 65

Query: 61  AAGEMRHRTDLQLRNGSRGMWIGTFHGLAHRLLRLHWQDARLPEGFQVMDSDDQLRLVKR 120
           AA EMRHR    +     GMW+GTFHGLAHRLLR H  DA LP+ FQ++DS+DQLRL+KR
Sbjct: 66  AAAEMRHRIGQLMGTSQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLKR 125

Query: 121 VVQSLELDETKYPPKQMGWWINEQKDEGRRPQHIQPEPNDDWTEVRRQVYAAYQERCDRS 180
           +++++ LDE ++PP+Q  W+IN QKDEG RP HIQ   N    +  ++VY AYQE CDR+
Sbjct: 126 LIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQSYGNPV-EQTWQKVYQAYQEACDRA 184

Query: 181 GLLDFAELLLRAHELLRDTPALLAHYRARFREILVDEFQDTNAIQYAFVRVLAGESGHVF 240
           GL+DFAELLLRAHEL  + P +L HYR RF  ILVDEFQDTN IQYA++R+LAG++G V 
Sbjct: 185 GLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDTGKVM 244

Query: 241 VVGDDDQAIYGWRGAKVENVQRFLKDFPGAQTVRLEQNYRSSANILGAANAVIAHNPDRI 300
           +VGDDDQ+IYGWRGA+VEN+QRFL DFPGA+T+RLEQNYRS++NIL AANA+I +N  R+
Sbjct: 245 IVGDDDQSIYGWRGAQVENIQRFLNDFPGAETIRLEQNYRSTSNILSAANALIENNNGRL 304

Query: 301 GKQLWTDSGDGDPIDLYAAYNEVDEARYVVERARQWVRDGGSYGEVAVLYRSNAQSRALE 360
           GK+LWTD  DG+PI LY A+NE+DEAR+VV R + W  +GG+  E A+LYRSNAQSR LE
Sbjct: 305 GKKLWTDGADGEPISLYCAFNELDEARFVVNRIKTWQDNGGALAECAILYRSNAQSRVLE 364

Query: 361 EALIAEQLPYRVYGGMRFFERAEIKDALAYLRMLTNRSDDAAFERAVNTPTRGIGDRTLD 420
           EAL+   +PYR+YGGMRFFER EIKDAL+YLR++ NR+DDAAFER VNTPTRGIGDRTLD
Sbjct: 365 EALLQASMPYRIYGGMRFFERQEIKDALSYLRLIANRNDDAAFERVVNTPTRGIGDRTLD 424

Query: 421 EVRRLARANALSLWEAAMLCTQENTLAARARNALATFLSLVGQLQAETGEMDLAERIDHV 480
            VR+ +R   L+LW+A     QE  LA RA +AL  F+ L+  L  ET +M L  + D V
Sbjct: 425 VVRQTSRDRQLTLWQACRELLQEKALAGRAASALQRFMELIDALAQETADMPLHVQTDRV 484

Query: 481 LMRSGLREHWAKESRGGLDSESRTENLDELVSVASRFTRPDDEDSQGMTELVAFLAYASL 540
           +  SGLR  + +E   G   ++R ENL+ELV+   +F+   +E+ + +  L AFL++A+L
Sbjct: 485 IKDSGLRTMYEQEK--GEKGQTRIENLEELVTATRQFSY--NEEDEDLMPLQAFLSHAAL 540

Query: 541 EAGEGQAQAGEEGVQLMTLHSAKGLEFPIVFLVGLEDGLFPSARSLEESGRLEEERRLAY 600
           EAGEGQA   ++ VQLMTLHSAKGLEFP VF+VG+E+G+FPS  SL+E GRLEEERRLAY
Sbjct: 541 EAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAY 600

Query: 601 VGITRARQKLVLCYAESRRIHGQDNYNVPSRFLREIPRDLLHEVRPKVQVSRTASLGAAR 660
           VG+TRA QKL L YAE+RR++G++ Y+ PSRF+ E+P + + EVR +  VSR  S     
Sbjct: 601 VGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRATVSRPVS-HQRM 659

Query: 661 GGPVHAVVDAAPIKLGANVEHPKFGGGVVVDYEGAGAHARVQVQFDEVGAKWLVMAYANL 720
           G P+  V + +  KLG  V H KFG G +V+ EG+G H+R+QV F   G KWLV AYA L
Sbjct: 660 GTPM--VENDSGYKLGQRVRHAKFGEGTIVNMEGSGEHSRLQVAFQGQGIKWLVAAYARL 717

Query: 721 TVV 723
             V
Sbjct: 718 ETV 720