Pairwise Alignments

Query, 406 a.a., RNA-2',3'-PO4:RNA-5'-OH ligase from Xanthomonas campestris pv. campestris strain 8004

Subject, 407 a.a., RtcB family protein from Pantoea agglomerans CFBP13505 P0401

 Score =  453 bits (1166), Expect = e-132
 Identities = 241/410 (58%), Positives = 293/410 (71%), Gaps = 12/410 (2%)

Query: 4   HTYEFLHADGTSTPIKGWVRGVPLEEQALAQLRNIAAVPFVGPWVAVMPDVHLGKGATVG 63
           ++Y+ L  +    PIK W  GVP+E +A  QL N A +PF+   +AVMPDVHLGKG+T+G
Sbjct: 3   NSYQTLQQE-KGVPIKMWTNGVPVEPEAREQLLNTAKMPFIFRHLAVMPDVHLGKGSTIG 61

Query: 64  SVIPTRGAIIPAAVGVDIGCGMAAVRTTLRAKDLPDNLAQLRSSIERSVPVG--NGRG-- 119
           SVIPT+GAIIPAAVGVDIGCGM AVRT+L A DLPDNL+ +RS+IE++VP G  N R   
Sbjct: 62  SVIPTKGAIIPAAVGVDIGCGMIAVRTSLMASDLPDNLSGIRSAIEQAVPHGRTNTRSRR 121

Query: 120 --GEHRNLPDSIATRIAQSGLVQRLEAIKQTHRRIRTDKLECQIGTLGGGNHFIEICLDE 177
             G  +  P  +    A+  L    + + Q H  +        +GTLG GNHFIE+CLDE
Sbjct: 122 DKGAWQTPPQEVDRHWAE--LAPGFKTLTQKHPTLFKTNNYQHLGTLGTGNHFIEVCLDE 179

Query: 178 TDAVWVMLHSGSRGTGNLIGTYFIERAREQLANRVLGFHLPDKDLAFFMQGEPLFDEYVE 237
              VWVMLHSGSRG GN IG  FI  A++ +   +   +LPD +LA+F +G   F++YVE
Sbjct: 180 CLQVWVMLHSGSRGVGNAIGNLFIALAQKDMQQHIA--NLPDHNLAYFREGSRHFNDYVE 237

Query: 238 AVSWAQDYARENREAMMARVLAEMRHRLPK-FQLEKLAVNCHHNYVQKETHGGEELLITR 296
           AVSWAQD+AR NREAMM RVLA M   + K F     AVNCHHNYV++ETH GE +L+TR
Sbjct: 238 AVSWAQDFARHNREAMMERVLAAMSRVISKPFSTHLEAVNCHHNYVEQETHFGESMLVTR 297

Query: 297 KGAVSARTGELGIIPGSMGTRSYIVRGLGNAESFHSCSHGAGRVMSRTAARQQITLAQHR 356
           KGAVSA+ G++GIIPGSMG +S IVRGLGN ESF SCSHGAGR+MSRTAA+ + T+   R
Sbjct: 298 KGAVSAQKGQMGIIPGSMGAKSIIVRGLGNEESFCSCSHGAGRIMSRTAAKARFTVEDQR 357

Query: 357 EATAHVECRKDAAVIDESPAAYKSIDAVMAAQQDLVEVLHTLRQVVCIKG 406
            ATAHVECRKD  VIDE P AYK IDAVMAAQ  LVEV+HTL QVVC+KG
Sbjct: 358 RATAHVECRKDKEVIDEIPMAYKDIDAVMAAQSSLVEVVHTLSQVVCVKG 407