Pairwise Alignments

Query, 589 a.a., ATP-dependent RNA helicase RhlB from Xanthomonas campestris pv. campestris strain 8004

Subject, 485 a.a., Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score =  318 bits (815), Expect = 3e-91
 Identities = 180/411 (43%), Positives = 247/411 (60%), Gaps = 3/411 (0%)

Query: 3   AAPGLPRAPHEDGIMSDKPLTDLTFSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPG 62
           A P +P    ED ++  +      F  F+L P L+  ++  GF  CTPIQA  L   L G
Sbjct: 75  AKPPVPEWKLEDFVVEPQE-GKTRFHDFNLAPELMHAIQDLGFPYCTPIQAGVLGFTLKG 133

Query: 63  GDVAGQAQTGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVK 122
            D  G+AQTGTGKT AFL++++ +L   P  A+R   +PRALI+APTREL +QI KDA  
Sbjct: 134 KDAIGRAQTGTGKTAAFLISIIEQLTQTPPPAERYMGEPRALIIAPTRELVVQIAKDAAD 193

Query: 123 FGADLGLRFALVYGGVDYDKQ-RELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVL 181
                 L      GG+D+DKQ ++L  +  D+++ATPGRL+D+  Q   V L   E+ VL
Sbjct: 194 LTKYTNLNVMTFVGGMDFDKQLKQLEARHCDILVATPGRLLDF-NQRGEVHLDMVEVMVL 252

Query: 182 DEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETE 241
           DEADRM D+GFI  +R ++R+ P +G RQTLLFSAT +  V+ LA +   +P  + +E+ 
Sbjct: 253 DEADRMLDMGFIPQVRQIIRQTPHKGERQTLLFSATFTEDVMNLAKQWTTDPSIVEIESL 312

Query: 242 TITAARVRQRIYFPSDEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVG 301
            + +  V Q IY  +  +K  LL  L++ +   R MVF N K  V R+   L R G    
Sbjct: 313 NVASDNVEQHIYAVAGADKYKLLYNLVTDNGWERVMVFANRKDEVRRIEERLVRDGVNAA 372

Query: 302 VLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRI 361
            LSGDVPQ KR   L  F++G++ +LVATDVA RG+HIDG+ +V N+ LP   +DYVHRI
Sbjct: 373 QLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRI 432

Query: 362 GRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIPVEPVTTELLTPLPRT 412
           GRT R G +G +ISFA E  +  LP IE  + +KI  E   T LL  + R+
Sbjct: 433 GRTGRAGADGVSISFAGEDDSYQLPAIEEKLGRKISCETPPTHLLRAVVRS 483