Pairwise Alignments

Query, 589 a.a., ATP-dependent RNA helicase RhlB from Xanthomonas campestris pv. campestris strain 8004

Subject, 495 a.a., ATP-dependent helicase from Ralstonia solanacearum UW163

 Score =  301 bits (771), Expect = 4e-86
 Identities = 188/447 (42%), Positives = 257/447 (57%), Gaps = 27/447 (6%)

Query: 18  SDKPLTD-LTFSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKT 76
           S  P +D +TF +F LHP ++  L  +G+TR TPIQA  +PV + G DV G AQTGTGKT
Sbjct: 7   STAPSSDSVTFDTFGLHPDILRALTESGYTRPTPIQAAAIPVVVGGRDVMGAAQTGTGKT 66

Query: 77  LAFLVAVMNRLLIRPALADRKPEDP-RALILAPTRELAIQIHKDAVKFGADLGLRFALVY 135
             F + ++  LL     +      P RALIL PTRELA Q++ +  K+     LR A+V+
Sbjct: 67  AGFSLPIIQNLLPEANTSASPARHPVRALILTPTRELADQVYDNVAKYAKYTALRSAVVF 126

Query: 136 GGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKD 195
           GGVD + Q E L++GV++++ATPGRL+D+V+Q  V +L    + VLDEADRM D+GF+ D
Sbjct: 127 GGVDMNPQTEQLRRGVEILVATPGRLLDHVQQRSV-NLSQVRMLVLDEADRMLDMGFLPD 185

Query: 196 IRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFP 255
           ++ ++  +P    RQTLLFSAT S  + +LA  ++  P+ + V     TA  VRQ IY  
Sbjct: 186 LQRIINLLPAH--RQTLLFSATFSPEIKKLAASYLRHPQTIEVARSNATADNVRQVIYTV 243

Query: 256 SDEEKQTLLLGLL-SRSEG---ARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKK 311
            D  KQ  L+ LL  R+E    ++ +VF N+K    R+AR LER       + GD  Q +
Sbjct: 244 PDGHKQAALVHLLRQRAEQGLPSQCIVFSNSKIGCSRLARALEREKINANAIHGDKTQIE 303

Query: 312 RESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEG 371
           R   L  F++G +++LVATDVAARGL I  +  V N+DLPF+AEDYVHRIGRT R G  G
Sbjct: 304 RMQTLEAFKQGTVDVLVATDVAARGLDISQMPCVINFDLPFNAEDYVHRIGRTGRAGASG 363

Query: 372 DAISFACERYAMSLPDIEAYIEQKIPVEPVTTELLTPLPRTPRATVEGEEVDDDAGDSVG 431
           DA+S         L DIE  I++ +P E               A V+ +   + A D   
Sbjct: 364 DALSLFAPGDERLLADIEKLIKRNLPRE---------------ALVDFDPTGEQARDRDR 408

Query: 432 TIFREAREQRAADEARRGGGRSGPGGA 458
              RE  E+R   E RR   R    GA
Sbjct: 409 ---RERDERRNRTEIRRSRERDERNGA 432