Pairwise Alignments

Query, 589 a.a., ATP-dependent RNA helicase RhlB from Xanthomonas campestris pv. campestris strain 8004

Subject, 474 a.a., ATP-dependent RNA helicase RhlB from Pseudomonas sp. S08-1

 Score =  320 bits (819), Expect = 1e-91
 Identities = 175/386 (45%), Positives = 238/386 (61%), Gaps = 2/386 (0%)

Query: 27  FSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNR 86
           F  F L P L+  +   GF  CTPIQA  L   L G D  G+AQTGTGKT AFL++ + +
Sbjct: 88  FHDFRLAPELMHAIHDLGFPYCTPIQAQVLGHTLKGKDAIGRAQTGTGKTAAFLISTITQ 147

Query: 87  LLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQ-RE 145
           LL      +R   +PRALI+APTREL +QI KDA       GL      GG+D+DKQ ++
Sbjct: 148 LLQTQVPKERYMGEPRALIIAPTRELVVQIAKDAEALTKYTGLNVMQFVGGMDFDKQLKQ 207

Query: 146 LLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPE 205
           L  +  D+++ATPGRL+D+  Q   V L   E+ VLDEADRM D+GFI  +R ++R+ P 
Sbjct: 208 LESRYCDILVATPGRLLDF-NQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPM 266

Query: 206 RGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDEEKQTLLL 265
           +G RQTLLFSAT +  V+ LA +    P  + +E E + +  V Q +Y  S ++K  LL 
Sbjct: 267 KGDRQTLLFSATFTEDVMNLARQWTVNPAIVEIEPENVASDTVEQHVYAVSSKDKYKLLY 326

Query: 266 GLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLE 325
            L+++++  R MVF N +  V R+   L R G     +SGDVPQ KR   L  F++G++ 
Sbjct: 327 NLVTQNDWQRVMVFANRRDEVRRIEEKLIRDGVSAAQMSGDVPQHKRIKTLEGFREGKIR 386

Query: 326 ILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSL 385
           ++VATDVA RG+H+DG+ +V N+ LP   +DYVHRIGRT R G  G +ISFA E  A +L
Sbjct: 387 VMVATDVAGRGIHVDGISHVINFTLPEVPDDYVHRIGRTGRAGASGTSISFAGEDDAFAL 446

Query: 386 PDIEAYIEQKIPVEPVTTELLTPLPR 411
           P IE  + +KI  E    ELL P+PR
Sbjct: 447 PPIEELLGRKINCEMPPEELLKPVPR 472