Pairwise Alignments

Query, 589 a.a., ATP-dependent RNA helicase RhlB from Xanthomonas campestris pv. campestris strain 8004

Subject, 489 a.a., ATP-dependent RNA helicase RhlB from Pseudomonas fluorescens SBW25

 Score =  316 bits (809), Expect = 2e-90
 Identities = 175/386 (45%), Positives = 234/386 (60%), Gaps = 2/386 (0%)

Query: 27  FSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNR 86
           F  F L P L+  ++  GF  CTPIQA  L   L G D  G+AQTGTGKT AFL++++ +
Sbjct: 102 FHDFKLAPELMHAIQDLGFPYCTPIQAQVLGFTLAGKDAIGRAQTGTGKTAAFLISIITQ 161

Query: 87  LLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQREL 146
           LL  P   +R   +PRALI+APTREL +QI KDA       GL      GG+D+DKQ + 
Sbjct: 162 LLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLKH 221

Query: 147 LQ-QGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPE 205
           L+ +  D+++ATPGRL+D+  Q   V L   E+ VLDEADRM D+GFI  +R ++R+ P 
Sbjct: 222 LEARHCDILVATPGRLLDF-NQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPP 280

Query: 206 RGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPSDEEKQTLLL 265
           +  RQTLLFSAT +  V+ LA +   +P  + +E   + +  V Q IY  +  +K  LL 
Sbjct: 281 KAERQTLLFSATFTEDVMNLAKQWTTDPSIVEIEALNVASENVEQHIYAVAGADKYKLLY 340

Query: 266 GLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLE 325
            L++ +   R MVF N K  V R+   L R G     LSGDVPQ KR   L  F++G++ 
Sbjct: 341 NLVNDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIR 400

Query: 326 ILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSL 385
           +LVATDVA RG+HIDG+ +V N+ LP   +DYVHRIGRT R G  G +ISFA E  +  L
Sbjct: 401 VLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGAAGVSISFAGEDDSYQL 460

Query: 386 PDIEAYIEQKIPVEPVTTELLTPLPR 411
           P IE  + +KI  E   T LL  + R
Sbjct: 461 PSIETLLGRKISCETPPTHLLRAVER 486