Pairwise Alignments

Query, 589 a.a., ATP-dependent RNA helicase RhlB from Xanthomonas campestris pv. campestris strain 8004

Subject, 421 a.a., ATP-dependent RNA helicase RhlB from Escherichia coli ECRC62

 Score =  427 bits (1099), Expect = e-124
 Identities = 225/401 (56%), Positives = 277/401 (69%), Gaps = 2/401 (0%)

Query: 17  MSDKPLTDLTFSSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKT 76
           MS   LT+  FS F LHP +V  LE  GF  CTPIQAL LP+ L G DVAGQAQTGTGKT
Sbjct: 1   MSKTHLTEQKFSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKT 60

Query: 77  LAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYG 136
           +AFL +  + LL  PA+ADRK   PRALI+APTRELA+QIH DA       GL+  L YG
Sbjct: 61  MAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYG 120

Query: 137 GVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDI 196
           G  YDKQ ++L+ GVD++I T GRLIDY KQ+ + +L A ++ VLDEADRM+DLGFIKDI
Sbjct: 121 GDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHI-NLGAIQVVVLDEADRMYDLGFIKDI 179

Query: 197 RFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPS 256
           R+L RRMP    R  +LFSATLS+RV ELA+E MN  E + VE E  T  R+++ +++PS
Sbjct: 180 RWLFRRMPPANQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPS 239

Query: 257 DEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLL 316
           +EEK  LL  L+      R ++F NTK   E +   L   G+RVG+L+GDV QKKR  +L
Sbjct: 240 NEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRIL 299

Query: 317 NRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISF 376
           + F +G L+ILVATDVAARGLHI  V +V+NYDLP D EDYVHRIGRT R G  G +IS 
Sbjct: 300 DEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISL 359

Query: 377 ACERYAMSLPDIEAYIEQKIPVEPVTTE-LLTPLPRTPRAT 416
           ACE YA++LP IE YI   IPV     + L+T LP+  R T
Sbjct: 360 ACEEYALNLPAIETYIGHSIPVSKYNPDALMTDLPKPLRLT 400