Pairwise Alignments

Query, 458 a.a., Multidrug and toxin extrusion (MATE) family efflux pump YdhE/NorM from Xanthomonas campestris pv. campestris strain 8004

Subject, 465 a.a., multidrug efflux protein from Agrobacterium fabrum C58

 Score =  224 bits (571), Expect = 5e-63
 Identities = 145/454 (31%), Positives = 226/454 (49%), Gaps = 17/454 (3%)

Query: 3   VPHSSPSATPRFAAEVRTTGLLALPLVLGHVSTGLIGFVDNVIAGHHGTATLAAVTIGTS 62
           V  + PS +  + +  + T +L +PL+   ++   I   D VI G  G   LAA+ +   
Sbjct: 6   VAETVPSGSGSWFSHFKATLVLGIPLIGAQLAQLGIHTTDMVIVGQLGAEKLAAMVLAGQ 65

Query: 63  LLWLPMLVPIGTLISLTASVSQLVGAGREREIGPLFRQALWLSLGLGALMFGFLTAVPPL 122
             ++  +   G  +++   V+Q  G G         R  +W+++    L          +
Sbjct: 66  FFFVVFIFGSGFSVAVVPMVAQAYGQGDATSARRSLRMGMWVAIAYWLLALPIFFNAERI 125

Query: 123 LPTFGIAPDIVPGATDFLHAVRWGG-PALTFYFCMRYLSE----GMHWTLPTMLLGFGGL 177
           L   G  P++      +L   ++G  PAL FY     +S     G+   +  ++L   GL
Sbjct: 126 LVYLGQNPNVAALTGHYLAIAKFGLLPALLFYVLRGLVSAIGRAGIILYVTIIMLVMNGL 185

Query: 178 LVLAPLGYVLTYGKFGFAEHGAQGLGMASAITMWVQAIAFALYLWRSRRFAHLELFTHLE 237
           +      YVL +G FG    G  G  + + I      I    Y+         ELF    
Sbjct: 186 MA-----YVLVFGHFGLPAMGMNGAAVVAVIVNAFSFIFIVAYVQTREETKKYELFVRFW 240

Query: 238 GPRWRAIGELLRTGLPIGITVLMEGGLFIVTALLIGRLGSTEAAAHQIAINVSQLCFMIP 297
            P W A+ E+LR GLPI IT+L E  LF   ++L+G++G+ + AAH IA+ ++ + FMIP
Sbjct: 241 RPDWHALFEVLRLGLPISITILAEVTLFAAASILMGQIGTVQLAAHGIALQLASIAFMIP 300

Query: 298 MGVAEATTVRVGHAVGRGDPLGMRRAAWAGYAIVLGTQAVSASILLLGHDAIVGVYTND- 356
           +G+++A TVRVG A G+GD   + RA+   YAI  G  A+   IL       +  +  D 
Sbjct: 301 LGLSQAATVRVGVARGQGDFKNLIRASIMIYAIACGI-ALCGGILFAAVPEFLAKWFLDP 359

Query: 357 -----AAVAALASVLLLFAATFQFPDGIQVLSAGALRGLKDTRVPMFLAMFSYWGLGMPL 411
                A V A AS L++ A  FQ  DGIQ ++AG LRGLKD R+P  LA+ SYW +G+ L
Sbjct: 360 KLPEAAEVLAYASSLVVIAGIFQLVDGIQAVTAGLLRGLKDARIPAMLALISYWPIGLAL 419

Query: 412 GAGLGLGLGWGPQGMWIGLILGLTAAAILMGLRF 445
              +   LG+G +G+W G ++GL+ AA+L+ +RF
Sbjct: 420 AWTMAFPLGFGGRGVWFGFVIGLSTAAVLLTVRF 453