Pairwise Alignments

Query, 633 a.a., protease IV from Xanthomonas campestris pv. campestris strain 8004

Subject, 618 a.a., protease IV (signal peptide peptidase) from Escherichia coli BL21

 Score =  412 bits (1059), Expect = e-119
 Identities = 257/624 (41%), Positives = 361/624 (57%), Gaps = 24/624 (3%)

Query: 10  IATFFVGLWDVMNFTRRLIFNLVFFGFLFLLLLLFVVAIARGDGTKPLAARTTLVIAPEG 69
           IA FF   W ++NF R ++ NL FF FL L+ +   + ++ GD +K  A+R  L++   G
Sbjct: 8   IAGFFKWTWRLLNFVREMVLNL-FFIFLVLVGVGIWMQVSGGD-SKETASRGALLLDISG 65

Query: 70  TLVEQFSADP----VSRSLAKAVGDKSAEEVQLRDLVRVIEAAGKDSKIERVLLNLDKLQ 125
            +V++  +      +SR L  A  D+  +E  L D+V  I  A  D  I  ++++L    
Sbjct: 66  VIVDKPDSSQRFSKLSRQLLGASSDR-LQENSLFDIVNTIRQAKDDRNITGIVMDLKNFA 124

Query: 126 PSGFASQREVAKALQGLRASGKQIVAFSESMSQGQYLLAAQANEVYLDPMGSVLLEGLGR 185
                S + + KAL+  R SGK + A  E+ SQGQY LA+ AN+++L P G V L G   
Sbjct: 125 GGDQPSMQYIGKALKEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFAT 184

Query: 186 YRQYFREGLQDKLGVDVHLFRVGEYKSAAEPYILDAASADAKEADLFWMNDVWQRYLADV 245
              Y++  L DKL V  H+FRVG YKSA EP+I D  S  A+EAD  W+ ++WQ YL  V
Sbjct: 185 NGLYYKS-LLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTV 243

Query: 246 ATARKLSPAQLAAGIDTLPEGVTAAGGDLAKFALQQKLVDGLKTREQVDSLLTERGVADN 305
           A  R++   Q+  G   L EG+T  GGD AK+AL+ KLVD L +  +++  LT+     +
Sbjct: 244 AANRQIPAQQVFPGAQGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKE-FGWS 302

Query: 306 DADGGFRSIDFGSYLTQLQAQHSPMDSRPQVAVVVAAGEISGGEQPAGRIGGESTAALLR 365
             D  +R+I +  Y     A  +P D+   + VV A G I  GE+  G +GG++TAA +R
Sbjct: 303 KTDKNYRAISYYDY-----ALKTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIR 357

Query: 366 QARDDEEIKAVVLRVDSPGGEVFASEQIRREVVALKQAGKPVVVSMGDLAASGGYWISMN 425
            AR D ++KA+VLRV+SPGG V ASE IR E+ A + AGKPVVVSMG +AASGGYWIS  
Sbjct: 358 DARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTP 417

Query: 426 ADRIYADPSTISGSIGIFGMVPNLTRALDKIGVHTDGVGTTRFAGAFDITRPLDPAAGQV 485
           A+ I A+PST++GSIGIFG++  +  +LD IGVHTDGV T+  A    ITR L P A  +
Sbjct: 418 ANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQLM 476

Query: 486 IQAVINKGYADFTGKVAQARHQSVEAIDKVARGRVWSGAQAKDHGLVDAFGGMQEAVADA 545
           +Q  I  GY  F   VA ARH + E IDK+A+G VW+G  AK +GLVD+ G   +AVA A
Sbjct: 477 MQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKA 536

Query: 546 ASRAKLSKGKFRVRYVEKAATPFSQFMSGFAGSRLGAWMLSDSGMARALLARSLPEVDTQ 605
           A  AK+   ++ + Y     T F + M   +GS     ML D+   +A+L   L  V + 
Sbjct: 537 AELAKVK--QWHLEYYVDEPTFFDKVMDNMSGSVRA--MLPDA--FQAMLPAPLASVAST 590

Query: 606 LRFVEDAVHDSKAGGTPVKALAYC 629
           ++   D +    A   P    A+C
Sbjct: 591 VKSESDKL---AAFNDPQNRYAFC 611