Pairwise Alignments

Query, 323 a.a., Tyrosine recombinase XerD from Xanthomonas campestris pv. campestris strain 8004

Subject, 298 a.a., site-specific tyrosine recombinase from Escherichia coli BL21

 Score =  296 bits (757), Expect = 5e-85
 Identities = 159/301 (52%), Positives = 200/301 (66%), Gaps = 6/301 (1%)

Query: 22  EDDQAIQRFLDRLWAEQGVARQTLDSYRRDLEGLARWRDGAGGGLQGADRSALFDYLRWR 81
           +D   I++FLD LW E+ +A  TL++YRRDL  +  W    G  L  A    L   L  R
Sbjct: 3   QDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAER 62

Query: 82  TEARYAPRSNARLLSTLRGFYALCLRDGVRSDDPTALLDPPRLPRSLPKALTESQIDALL 141
            E  Y   S+ARLLS +R  +    R+  R DDP+A L  P+LP+ LPK L+E+Q++ LL
Sbjct: 63  LEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLL 122

Query: 142 AAPEIGTPLGLRDRAMLELMYAAGLRVSELVTLPAVAINLRQGVLRVTGKGSKERLVPLG 201
            AP I  PL LRD+AMLE++YA GLRVSELV L    I+LRQGV+RV GKG+KERLVPLG
Sbjct: 123 QAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLG 182

Query: 202 EESQHWLERYLETARPTLSERKAVPAVDGQVPLFIDAARRPLSRQQFWGLVKRYAAVAGI 261
           EE+ +WLE YLE  RP L    ++        LF     + ++RQ FW  +K YA +AGI
Sbjct: 183 EEAVYWLETYLEHGRPWLLNGVSIDV------LFPSQRAQQMTRQTFWHRIKHYAVLAGI 236

Query: 262 DPDTVSPHGLRHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVARQHLQTLHARHHP 321
           D + +SPH LRH+FATHLLNHGADLR +QMLLGHS LSTTQIYT VA + L+ LH +HHP
Sbjct: 237 DSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHP 296

Query: 322 R 322
           R
Sbjct: 297 R 297