Pairwise Alignments

Query, 1082 a.a., hypothetical protein from Xanthomonas campestris pv. campestris strain 8004

Subject, 1035 a.a., DNA polymerase III alpha subunit (EC 2.7.7.7) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 1000 bits (2585), Expect = 0.0
 Identities = 541/1050 (51%), Positives = 692/1050 (65%), Gaps = 26/1050 (2%)

Query: 42   ADTLPAYAELHCLSDFSFLRGASSAEQLFARAHHCGYSALAITDECSLAGIVRGLEASRA 101
            AD LP Y EL CLS+FSFLRGAS  E+L  RA   GY ALA+ DECSLAG+VR   A++ 
Sbjct: 3    ADVLPDYVELRCLSNFSFLRGASHPEELVERAAALGYQALALVDECSLAGVVRAHVAAKK 62

Query: 102  TGVQLIVGSEFTLVDGTRFVLLVE--NAHGYPQLCSVITTGRRAAGKGAYRLGRAEVEAH 159
               QL++GS+F +     F L+V   N +GY  LC  IT  RR+A KG+YRL   +++A 
Sbjct: 63   HRFQLLIGSQFQVRCDAPFTLVVLACNLNGYGNLCEFITRLRRSAPKGSYRLAIGDIDAQ 122

Query: 160  -FRDVVPGVFALWLPGDQPQAEQGAWLQRVFAERAFLAVELHREQDDAARLQALQALAQQ 218
               D V            P      WL + F  R +L VE     DD  RL  L+  ++ 
Sbjct: 123  ALADCVVIAVPDRHSDQDPMDTVARWLLQHFRGRCWLGVEQLCRFDDEMRLHRLRQSSEL 182

Query: 219  LGMSALASGDVQMAQRRDRIVQDTLTAIRHTLPLADCGAHLFRNGERHLRPRRALGNIYP 278
              +  +A GDV+M  R  + + D LTA R   PL +CG  L  + E+ LR R  LG +YP
Sbjct: 183  TAVPLVAVGDVRMHVRSRKPLHDVLTATRIGKPLTECGFVLEPSAEQRLRGRLTLGQLYP 242

Query: 279  HALLQASVELAQRCTFDLSKVQYTYPRELVPQGHTPASYLRQLTEAGMRERWPEGAPAQV 338
              LL  ++ +A RC F L +++Y YP E++P+G TP S+LRQLTEAG R RWP+G P   
Sbjct: 243  ADLLAETLAVAARCDFSLDELRYQYPSEVIPEGETPQSHLRQLTEAGARRRWPQGTPEAF 302

Query: 339  VAQIDSELELIAYKGYEAFFLTVQDVVRFARAQGILCQGRGSSANSAVCYALGITAVNPS 398
              QI+ ELELIAYK YE +FLTV D+V FAR++ ILCQGRGS+ANS VCY LGIT V+P 
Sbjct: 303  AQQIEHELELIAYKQYEHYFLTVHDIVAFARSKDILCQGRGSAANSVVCYCLGITEVDPG 362

Query: 399  ETRLLMARFLSKERDEPPDIDVDFEHERREEVLQYVYTKYGRERAALAATVICYRGKSAV 458
             T LL  RF+S+ERDEPPDIDVDFEHERREEV+QY+Y KYGRERAAL ATVI YR +SA+
Sbjct: 363  RTGLLFERFISRERDEPPDIDVDFEHERREEVIQYLYGKYGRERAALTATVISYRPRSAL 422

Query: 459  RDVAKAFGLPPDQIALLANCYGWGNGDTPMEQRIAEAGFDLANPLINKILAVTEHLRDHP 518
            RDV KA G     + +LA    W +G     +R+ EAG D  +  + ++L +T  L   P
Sbjct: 423  RDVGKALGFAEGSLDVLARQSRWWDGHAIAPERLQEAGLDTGDLKVRQLLELTSTLMGFP 482

Query: 519  RHLSQHVGGFVISDEPLSMLVPVENAAMADRTIIQWDKDDLETMKLLKVDCLALGMLTCI 578
            RHLSQH GGFV++  PLS LVP+ENA M DRT+I+WDKDDL+ + LLKVD LALGMLT +
Sbjct: 483  RHLSQHTGGFVLTQLPLSRLVPIENATMKDRTVIEWDKDDLDAVGLLKVDVLALGMLTAL 542

Query: 579  RKTLDLVRGHRGRDYTIATLPGEDAATYKMIQRADTVGVFQIESRAQMAMLPRLKPREFY 638
            RK + L+   +GR + +  +P  D  TY M+  ADTVGVFQIESRAQM+MLPRL+PR +Y
Sbjct: 543  RKAMALIGEKQGRAFGMQDIPDGDDPTYDMVCAADTVGVFQIESRAQMSMLPRLRPRSYY 602

Query: 639  DLVIEVAIVRPGPIQGDMVHPYLRRRQGYEPVSFPSP----GVEEILGRTLGIPLFQEQV 694
            DLVIEVA+VRPGPIQG  VHPYL RRQG  PVSFP P     ++  LGRT+G+P+FQEQ 
Sbjct: 603  DLVIEVALVRPGPIQGGAVHPYLNRRQGKVPVSFPGPHGGRALKAALGRTMGVPIFQEQC 662

Query: 695  MEL-VIHAGYTDSEADQLRRSMAAWRRGGDMEPHRVRIRELMAGRGYAPEFIDQIFEQIK 753
            M++ V+ AG+T  EAD+LRR+MAAW+R G+++ +  R+ + M  RGY  EF   IFEQIK
Sbjct: 663  MQIAVLSAGFTPGEADELRRAMAAWKRHGNVQKYEERLVKGMTDRGYELEFAQSIFEQIK 722

Query: 754  GFGSYGFPQSHAASFAKLVYASCWLKRHEPAAFACGLLNAQPMGFYSASQIVQDARRGSP 813
            GF SYGFP+SHAASFA LVY S W+K H PA F   LLN+QP+GFY+ SQ+VQDA+    
Sbjct: 723  GFSSYGFPESHAASFALLVYVSAWIKCHHPAEFLTALLNSQPLGFYTPSQLVQDAK---- 778

Query: 814  ERQRVEVLPVDVLHSDWDNILVGGRPWHSDADPGEQPAIRLGLRQVSGLSEKVVERIVAA 873
             R  V V PVDVLHSD D+ +        DAD     A+RLG+R VSG+ +   ERIV A
Sbjct: 779  -RHGVVVRPVDVLHSDRDSTI--------DAD----GAVRLGMRLVSGIGQDATERIVQA 825

Query: 874  RAQRPFADIGDLCLRAALDEKARLALAEAGALQSMVGNRNAARWAMAGVEARRPLLPGSP 933
            RAQ+ F +  DL  RA LD+    ALA A AL  + G+R    W  A + +   LL G+P
Sbjct: 826  RAQQAFRNAQDLARRAGLDQPQMKALAAADALMGLSGHRRQQVWDAAALRSPPALLKGAP 885

Query: 934  AERA-VELPAPRAGEEILADYRAVGLSLRQHPMALLRPQMLQRRILGLRELQARRHGSGV 992
             + A + LPA   GE ++ DY + GL+LR+HP+ALLR ++ +RR++   +LQ    G  V
Sbjct: 886  VDEAPLALPAAPEGEAVVWDYASTGLTLRRHPLALLREELAKRRLMTAAQLQDAPDGRLV 945

Query: 993  HVAGLVTQRQRPATAKGTIFVTLEDEHGMINVIVWSHLAMRRRRALLESRLLAVRGRWER 1052
               G+VT RQ+P T+ G +FV+LEDE G++ VIVW  +  R+R  L  +RLLAV GRW+R
Sbjct: 946  RHCGIVTLRQQPGTSSGVVFVSLEDETGVVQVIVWQRIRERQRAVLTGARLLAVYGRWQR 1005

Query: 1053 VDGVEHLIAGDLYDLSDLLGEMQLPSRDFH 1082
               V +LIAG L DL+ LL  +   SRDFH
Sbjct: 1006 EGEVRNLIAGHLEDLTPLLNGLSTVSRDFH 1035