Pairwise Alignments

Query, 873 a.a., DNA mismatch repair protein MutS from Xanthomonas campestris pv. campestris strain 8004

Subject, 893 a.a., DNA mismatch repair protein MutS from Azospirillum sp. SherDot2

 Score =  605 bits (1561), Expect = e-177
 Identities = 378/893 (42%), Positives = 533/893 (59%), Gaps = 53/893 (5%)

Query: 20  TPLMKQFFAAKSDYPDLLLFFRMGDFYELFYDDARKAARLLDITLTQRGSSGGAPIPMAG 79
           TP+M Q+   K  +PD LLF+RMGDFYE+F++DA  AA  LDI LT+RG   G  IPM G
Sbjct: 14  TPMMAQYLEIKQAHPDCLLFYRMGDFYEMFFEDAVNAAAALDIALTKRGQHLGEDIPMCG 73

Query: 80  VPVHAYEGYLARLVALGESVAICEQIGDPALAK-----GLVERKVVRIVTPGTVTDEALL 134
           VPVH++E YL RL+  G  VAICEQ+ DPA AK      +V+R V+RIVTPGT+T+++LL
Sbjct: 74  VPVHSHENYLQRLIRQGFRVAICEQMEDPAEAKKRGGKSVVKRGVIRIVTPGTLTEDSLL 133

Query: 135 DERRDTLLMAISRSKQGYGLAWADLAGGRFLVNEVDSVDALEAEIARLEPAELLVPDE-- 192
           D R    L A++ +  G GLAW +++ G  +V  V+    L A + RL+P E+L+ ++  
Sbjct: 134 DARSSNWLAAVAETAGGLGLAWLEMSTGELVVQPVERT-GLGAALGRLDPQEVLISEKLS 192

Query: 193 ------DNWPEFLRGRVGVRRRPPWLFDADSGRRQLLAFFKLHDLSGFGIDDKPCATAAA 246
                 + W ++ + R+ V+  P   FD+++G+++LL  + +  L  FG   +    AAA
Sbjct: 193 QTPELFELWTDW-KSRLTVQPNPR--FDSENGKQRLLTQYGVGTLDAFGTFSR-AEVAAA 248

Query: 247 GALLGYVEETQKQRLPHLTSIAMEVASEAISMNAATRRHLELDTRVDGDTRNTLLGVLDS 306
           GAL+GYVE TQK R+P L+          + ++A+T R+LEL   ++G+ R +LL  +D 
Sbjct: 249 GALVGYVELTQKGRVPRLSPPRRLGPGAVMEIDASTARNLELTRTLNGERRGSLLATIDR 308

Query: 307 TVTPMGGRLLRRWLHRPLRLREVLVQRHHAVG-SLIDTGADTDVREAFRALGDLERILTR 365
           TVT  G RLL   L  PL     + +R   V  +L       ++R+A R+  DLER L+R
Sbjct: 309 TVTGAGARLLCAHLTSPLTDPVAIGRRLDMVEFALTGERLRAELRQALRSCPDLERALSR 368

Query: 366 VALRSARPRDFSTLRDGLALLPKVRTILA---PLDSPRLQTLYAELGEHDATAHLLISAV 422
           + L    PRD + +RDGL     +R +LA   PL    L  L   LG H      L  A+
Sbjct: 369 LTLGRGGPRDLAAIRDGLRQAGLIRELLAGAMPLPDG-LAALDKRLGAHSELVDQLNQAL 427

Query: 423 AEQPPLKFSDGGVIATGYDADLDELRRLSTNADQFLIDLEQRERASSGIATLKVGYNRVH 482
           A + PL   DGG IA  Y   LDEL  L   + + +  L+ +    +G+ +LKV +N V 
Sbjct: 428 APELPLLARDGGFIARDYSYALDELVTLRDESRRLIAGLQTKYAEIAGVPSLKVKHNNVL 487

Query: 483 GYYIEISKGQAEKAPLHYSR-----RQTLTNAERYITEELKSFEDKVLSARERSLSREKL 537
           GY+IE++   A+K      R     RQT+ NA R+ T EL   E ++  A +R+L+ E  
Sbjct: 488 GYHIEVTAAHADKLMSDKGREVFMHRQTMANAVRFGTVELSDLERRISEAADRALAVELE 547

Query: 538 LYEGLLDALGGELEGLKRCASALSELDVLAGFAERAQALDWSQPELESAPCLHIERGRHP 597
           L+ GL++A+ G+ + + + A AL+ LDV    AE A    +S+P ++ +    I  GRHP
Sbjct: 548 LFAGLVEAVAGKADAIAQAAHALAALDVATSLAELADERRYSRPLVDDSLAFSIAGGRHP 607

Query: 598 VVEAVRDQ----PFEPNDLDLHPDRRMLVITGPNMGGKSTYMRQNALIVLLAHIGSYVPA 653
           VVEAV D     PF  ND DL PD R+ ++TGPNM GKST++RQNALI +LA +G +VPA
Sbjct: 608 VVEAVLDAAHGGPFVANDCDLAPDNRLWLLTGPNMAGKSTFLRQNALIAILAQMGGFVPA 667

Query: 654 SRAVIGPIDRILTRIGAGDDLARGQSTFMVEMAETSYILHHATPQSLVLMDEIGRGTSTY 713
            +A IG +DR+ +R+GA DDLARG+STFMVEM ET+ IL+ +  ++LV++DEIGRGT+T+
Sbjct: 668 EQAHIGVVDRLYSRVGAADDLARGRSTFMVEMVETAAILNQSGARALVILDEIGRGTATF 727

Query: 714 DGLALADAVARHLAHTNRCYTLFATHYFELTALADASHAGGGSGIANVHLDAVEHGE-RL 772
           DGL++A A   HL   NRC  LFATHY ELT LA    A       + H   ++  +  +
Sbjct: 728 DGLSIAWACVEHLHDMNRCRALFATHYHELTMLASKLPA------LSCHTMRIKEWQGDV 781

Query: 773 VFMHAVKDGPANRSFGLQVAALAGLPKAAVQQARRRLAELEQRGGDSHA-----AEMAP- 826
           VF+H V  G A+RS+G+ VA LAGLP A V +A   L  LE   GD +A     AE  P 
Sbjct: 782 VFLHEVTAGAADRSYGIHVAKLAGLPPAVVGRADEVLKLLE--SGDQNATIHRLAEDLPL 839

Query: 827 --AALDAPQQF--GLFTAPS--SAAQEALQALDPDELTPKQALEALYRLKALL 873
             AAL  P +    + TAP+  SA + AL  +DPD LTP+QALE LYRL+ ++
Sbjct: 840 FSAALKRPAKVVAEVETAPAGPSAVEVALAGIDPDSLTPRQALEELYRLRGMV 892