Pairwise Alignments

Query, 444 a.a., 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) from Xanthomonas campestris pv. campestris strain 8004

Subject, 456 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Pseudomonas sp. RS175

 Score =  308 bits (789), Expect = 2e-88
 Identities = 177/427 (41%), Positives = 247/427 (57%), Gaps = 8/427 (1%)

Query: 16  AITDLSHDGRGVARRDGEGGKVTFISGALPGEVVVAEPTARSRHFDEAKTVEVLQASPQR 75
           +I  L++DGRG+   DG   +  F+ GAL GE V A          EA+T  V Q S  R
Sbjct: 30  SIERLANDGRGIGFVDG---RTWFVIGALAGEEVEARVLGAHGKVVEARTERVFQTSELR 86

Query: 76  VAPRCPHFGVCAGCVLQHLEESQQIVAKQRVLMDNLERIGHVTPQTVLPALVGDTWGYRR 135
               C H G C GC +QHL   +Q+  KQR+L + L R+  V P+     L G  + YRR
Sbjct: 87  RPAACAHAGQCGGCSVQHLPHEEQLALKQRMLAEQLSRVAGVEPEEWAAPLSGPEFAYRR 146

Query: 136 KGRFSVRRVEKKDKTLVGFRELDPRFVADLSVCYTVIPQIGEKIPQLAALVEGMDGKRDI 195
           + R +VR  +K  K  VG R    + +  +  C  ++  +   + +L  ++  +   + +
Sbjct: 147 RARVAVRWDQKAKKLEVGLRAAGSQDIVAIGDCPVLVQPLQPIMSRLPDMLRRLSKPQAL 206

Query: 196 PQIEFIAGDDAVALTIRHLQPLSARDEQALVEFAQAHDFAIFLQPGGVDSVHPLWPQEVP 255
             +E  AG  ++A+ +RH+ PLS  D   L +F   H+  ++L   G     P  P +  
Sbjct: 207 GHVELFAGS-SLAVLLRHMAPLSEADLTILKDFCAFHEAQLWLH--GEGEPQPAEPGQT- 262

Query: 256 LSFRLPKWDVELAFRPLDFIQVNASLNQKMIAHALALLDAKPDDRVLDLFCGLGNFTLPL 315
           L +RL  W +ELA+RP DFIQVNA +N+ MIA AL  L  +P++RVLDLFCGLGNF LPL
Sbjct: 263 LGYRLDPWGLELAYRPGDFIQVNAGINEAMIAQALQWLAPRPEERVLDLFCGLGNFALPL 322

Query: 316 ARTVREVVGVEGDAGLVARARENAQRNGLDNAQFYAADLTQDQRQTAWMRQGFDKLLLDP 375
           AR VREVV VEG   +V RA  NA  N L N  F+ ADL+Q      W+ +GF  +LLDP
Sbjct: 323 ARQVREVVAVEGVQVMVDRAAANALSNNLHNTAFFQADLSQPLAGAEWIGEGFSAVLLDP 382

Query: 376 PRSGAIDVLQQLPLKQFKRIVYVSCHPGSLARDAGYLVNEQGFSLLSAGAMDMFPHTAHV 435
           PR GA +V+++L      R+VYVSC+P +LARD   L+ +QG+ L  AG +DMFP TAHV
Sbjct: 383 PRDGAFEVVRKLASLGAGRLVYVSCNPATLARDTVELI-KQGYRLKRAGILDMFPQTAHV 441

Query: 436 ESIAVFE 442
           E++A+FE
Sbjct: 442 EAMALFE 448