Pairwise Alignments

Query, 830 a.a., FIG003033: Helicase domain protein from Xanthomonas campestris pv. campestris strain 8004

Subject, 836 a.a., ligase-associated DNA damage response DEXH box helicase from Rhizobium sp. OAE497

 Score =  434 bits (1117), Expect = e-126
 Identities = 289/831 (34%), Positives = 434/831 (52%), Gaps = 43/831 (5%)

Query: 18  WFAQRGWAPLPFQRDVWKRYLDGESGLLHTPTGSGKTLAAFGGPLLEALAARGRTPPATA 77
           WFA++GW P   Q ++  R   GES LL  PTG+GKTLA F  P L  L  RG+ PP +A
Sbjct: 19  WFAEKGWRPRAHQLELLARAEAGESTLLIAPTGAGKTLAGFL-PALTDLTRRGKIPPGSA 77

Query: 78  VARGRRQPQRSLQVLWITPLRALAADTARALREPVEALGLDWQVGLRTGDASARDKRLAR 137
                      +  L+++PL+ALA D  R L +PVE +GL   +  RTGD     ++  +
Sbjct: 78  FT--------GIHTLYVSPLKALAVDIERNLTKPVEEMGLPVTIENRTGDTPNAKRQRQK 129

Query: 138 SGKLDVLVTTPESLALLLSYPDTAPQLAALRCVIVDEWHELLGNKRGVLLQLCLARLRSW 197
               D+L+TTPE +ALLL+  +       LR V++DE H L+ +KRG +L L +ARLR  
Sbjct: 130 LNPPDILLTTPEQVALLLANGEAERFFKDLRYVVLDELHSLVTSKRGHMLSLGIARLRRL 189

Query: 198 SPALRIWGLSATLGNLAQARDVLLPHQPD----AALVS---GVKPRAMTLETLLPETGER 250
           +P L+  GLSAT+      +  L+  +      A LV+   G KP    L+T      ER
Sbjct: 190 APNLQTIGLSATVAEPMDLQKWLVAQEEGREHHAGLVTVEGGAKPEISILKT-----EER 244

Query: 251 FPWAGHLGLAQLARVLHKLMEQRTSLVFTNTRAQAELWHQALSAVWPEDAATLALHHGSL 310
            PW+GH     +  V  +L++ +T+L+F NTR+QAE+  Q L  +  ED   +ALHHGSL
Sbjct: 245 IPWSGHSAKYAIPDVYKELLDHQTTLLFVNTRSQAEMLFQELWTI-NEDNLPIALHHGSL 303

Query: 311 DPALRTAAEHGLRDGSLRCVVATSSLDLGVDFPAVDQVLQVGSPKGIARLLQRAGRARHR 370
           D + R   E  +    LR VVATS+LDLG+D+  VD V+ VG+PKG +RL QR GRA HR
Sbjct: 304 DVSQRRKVEAAMAANKLRAVVATSTLDLGIDWGDVDLVIHVGAPKGASRLAQRIGRANHR 363

Query: 371 PGESGHVVCVPSHALELLEYAAARRAIAQGQIETRPPPRLSLDVLAQHCVTLALGGGFQA 430
             E    + VP++  E++E  AA  A   G  +T P  + +LDVLAQH + +A    F  
Sbjct: 364 MDEPSKAILVPANRFEVMECQAALDANYIGAQDTPPVGQGALDVLAQHVLGMACAAPFDM 423

Query: 431 DALLREVRGTDAFATLDEATWQAVLDFIVQGGSALAHYPDFHKVVRDDAGIYRVTDRRVA 490
             L  E+     +A L   T++ ++DF+  GG AL  Y  + ++ R+  G++RV++ +VA
Sbjct: 424 LQLYDEITSASPYAALSWETFERIVDFVATGGYALRTYERYARIRRNKDGLWRVSNPQVA 483

Query: 491 LRHRLSIGTITSDGSVRVQFLR---GGR-------LGAVEEQFVGRLKRGDRFQFAGRLL 540
            ++RL++GTI     + ++ ++   GGR       LG +EE F  +L  GD F F+G++L
Sbjct: 484 QQYRLNLGTIVESPMLNLKMVKRGEGGRIGRGGAVLGKMEEYFFEQLSPGDTFIFSGKVL 543

Query: 541 ELVRLEDMTAYVRIAKGGSGVVPKWMGGRMPLSSALGREVEAVFADP---GDAPEMHTLA 597
               + +  A    A      +P + GG+ PLS+ L  +V ++ ADP   GD P+   + 
Sbjct: 544 RFEGIRENEALASQAFSLDPKIPSYAGGKFPLSTYLADQVRSMIADPDRWGDLPDQ--VR 601

Query: 598 PLLQLQSSLSALPGPGHLLVETIKARDGRHLFVYPFAGRQVNEGLAALLAARWGRRQRNT 657
             L +Q   S LP    LL+ET       ++  YPF GR  ++ L  LL  R  R     
Sbjct: 602 DWLSIQKDKSMLPKRDELLIETFPRGSRCYMVAYPFEGRLAHQTLGMLLTRRLERAGAKP 661

Query: 658 FSFAANDYGFVLSPAQD----VPVDAALLQELLSPARLFEDLRDSLNLGELARRQFREIA 713
             F   DY   +   +D    +      L +L     L ++L   L+   L +R FR  A
Sbjct: 662 LGFVCTDYSLGIWGLEDLGQMIASGRLSLADLFDEDMLGDELEAWLDESFLLKRTFRNCA 721

Query: 714 RVAGLLSPSLPGRAPRSLRQLQASSGLLYDVLQRFDPEHLLLAQAEREVFEGQLEFARLA 773
            +AGL+    PG+  +S RQ+  S+ L+YDVL+  +P+H+LL    ++   G L+ +RL 
Sbjct: 722 VIAGLIERRHPGK-EKSGRQVTVSADLIYDVLRSHEPDHILLQATRQDAGTGLLDISRLG 780

Query: 774 SALEDCAARVLRLCTPRSLTPLSFPLWAERVRGQLSTEDWKARVLRAAAQL 824
             L      +        ++PL+ P+  E  +  +  E   A +  AA  L
Sbjct: 781 DMLRRIKGHITHRALDH-ISPLAVPVMLEIGKEAVPGEAHDALLAEAADDL 830