Pairwise Alignments

Query, 849 a.a., ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD from Xanthomonas campestris pv. campestris strain 8004

Subject, 345 a.a., ATP-dependent DNA ligase from Agrobacterium fabrum C58

 Score =  168 bits (426), Expect = 4e-46
 Identities = 111/304 (36%), Positives = 153/304 (50%), Gaps = 15/304 (4%)

Query: 229 PQLAKLGQAPPEGAQWVHEIKWDGYRILATVTDGQVRLWSRNALEWTDKIPDIRDAIQAL 288
           P LA L   PP G  W +EIKWDGYR+   +    VR+ +R   +WT + P I  A + L
Sbjct: 42  PCLAMLKPVPPTGPDWAYEIKWDGYRLAVHIEPKGVRIITRGGHDWTHRFPTIAAAAKRL 101

Query: 289 NLRSARLDGE-LIAGRGTKEDFNLLQATLSGE----RQVPLALAVFDLLHIDGVEISEAP 343
            + +A LDGE ++     + DF  LQ +L G           L  FDLL+ DG ++++  
Sbjct: 102 GIGTAILDGEAVVLNSEGRSDFGALQRSLGGRGGKRASSESILFAFDLLYFDGHDLTKTE 161

Query: 344 LRERKQLLQQILANAPAGHLAYSSHVEGDGLEAFRVAGEQHFEGIISKRADRPYRGGRSD 403
           L  R+ LL  +L  A  G +  S  V G+G E    A     EGII+K  D PYR GR+ 
Sbjct: 162 LSVRRHLLTDLLDGA-VGAIQLSEEVAGEGAELLENARSLGLEGIIAKHRDSPYRPGRTG 220

Query: 404 DWRKTKQLASQEYAVVGYTAPKGSRTGFGSLLLATPDPQHGWLYVGRVGSGFSDTLMQEV 463
           DW K K + S+ + +VGY     +R G GSLLLA     H W+YVG VG+GF +     +
Sbjct: 221 DWLKIKCIQSESFMIVGYEQSAAARGGVGSLLLAA-RRDHDWVYVGAVGTGFKEKDAAYL 279

Query: 464 TQHLHGGGKRPTAHIPTEDTDLRGATW-FA-PRFVVEVFYRGIGGQQLLRQASLKAVRLD 521
            + L       T    T    L+G  + FA P  + E+ +RG      LR AS K +R  
Sbjct: 280 KKTL------DTLKTRTPVVPLKGKNYVFAQPTLIAEIEFRGWTDDGNLRHASYKGLREI 333

Query: 522 KDIA 525
           +D A
Sbjct: 334 QDNA 337