Pairwise Alignments

Query, 1464 a.a., Lhr-like helicases from Xanthomonas campestris pv. campestris strain 8004

Subject, 1437 a.a., ATP-dependent RNA helicase SrmB from Pseudomonas sp. RS175

 Score = 1675 bits (4337), Expect = 0.0
 Identities = 873/1435 (60%), Positives = 1049/1435 (73%), Gaps = 22/1435 (1%)

Query: 8    FHPVVAAWFGRTFAAPTPAQIAAWPAIKAGRHTLVAAPTGSGKTLTAFLAAIDALIRDGL 67
            FHP V AWF +TF A T AQ  AWP I   R TLVAAPTGSGKTLTAFLA +D L+  GL
Sbjct: 14   FHPAVRAWFSQTFPAITAAQARAWPLIGQRRSTLVAAPTGSGKTLTAFLAVLDELVHRGL 73

Query: 68   AQGGALPDQTRVIYVSPLKALSNDIHLNLEAPLHGIRAELLAQGLPDVPVRTAVRTGDTP 127
             QGG L DQT V+YVSPLKALSNDI +NL+ PL GI  +L    LP + + TAVRTGDTP
Sbjct: 74   EQGGLL-DQTLVVYVSPLKALSNDIRINLQNPLAGITEQLRRMDLPPLHITTAVRTGDTP 132

Query: 128  QRERAQARRVPPHILVTTPESLYVLLGSASGRSALRHVRTVIVDEIHAVAADKRGSHLAL 187
            Q+ER+  R+  PHILVTTPESLYVLLGS SGR  L   RTVIVDEIHA+AA KRGSHLAL
Sbjct: 133  QKERSAMRKTAPHILVTTPESLYVLLGSDSGRQMLASTRTVIVDEIHAIAASKRGSHLAL 192

Query: 188  TLERLQRLAEQPITRVGLSATQKPIDTVAQFLVGVGEDGAAAPCEIVDIGYTRQRDLALA 247
            +LERLQ L  +P+ R+GLSATQKPI+ V++FLVG G      PCEIVDIG+ R RDL + 
Sbjct: 193  SLERLQALCAEPLVRIGLSATQKPIEAVSRFLVGAGR-----PCEIVDIGHARPRDLGIE 247

Query: 248  LPPTPLSVVLSNDQWLQVYAEVAALAQQHRTTLVFVNTRRMAERAARHLGELLGKQRVAA 307
            +PP PLS V++ND W  VY  +A LA++HRTTLVFVNTRR+AER +RHL E LGK  VAA
Sbjct: 248  VPPVPLSAVMANDVWELVYNRLADLAREHRTTLVFVNTRRLAERLSRHLSERLGKDAVAA 307

Query: 308  HHGSLSRETRLLAERRLKAGELTVLVATASLELGLDIGDVDLVCQLGSPRSIATFLQRAG 367
            HHGSL++E RL AE+RLK GEL VL+ATASLELG+DIGDVDLVCQ+ SPRSI+ FLQR G
Sbjct: 308  HHGSLAKEFRLDAEQRLKRGELQVLIATASLELGIDIGDVDLVCQIASPRSISAFLQRVG 367

Query: 368  RSGHAVGGTPKARLFPQTRDELVECAALLDGIRRGELDALRFPIAPIDVLAQQIVAEAAC 427
            RSGH VGGTPK RLF  TRD+L+ECAALLD +RRGELD L  P AP+DVLAQQIVAE +C
Sbjct: 368  RSGHQVGGTPKGRLFATTRDDLIECAALLDCVRRGELDILHIPTAPLDVLAQQIVAEVSC 427

Query: 428  EDWDEDALFALVRRAWPFATLSRATFDAVVRMLCEGFSTRLGPRAGYLHRDAVNRRLHAR 487
            ++W E AL    RRA P+A L    + A+++ML EG + R G R+ YLHRDAV+R L  R
Sbjct: 428  QEWQEQALLETFRRASPYAALDEGHYQALLQMLAEGVNGRQGVRSAYLHRDAVSRTLRGR 487

Query: 488  RGARMTALTSGGTIPETGDYSVVLEPQAENIGTVNEDFAVESLTGDVFQLGNASYRILRV 547
            RG+++TA+TSGGTIP+  DYSV+LE Q  NIG+VNEDFAVES+ GDVFQLGN SYRI+RV
Sbjct: 488  RGSKLTAVTSGGTIPDNADYSVLLESQGLNIGSVNEDFAVESIAGDVFQLGNTSYRIIRV 547

Query: 548  DADKVRVEDAKGAPPNIPFWLGEAPGRSDALSLAVSRLREEIATRLDGARHAGAQA---W 604
            +  +VRVEDA+G PP IPFWLGEAPGRS  LS+AV+RL+ ++  RL GA     Q    W
Sbjct: 548  ETGRVRVEDAQGQPPTIPFWLGEAPGRSAELSMAVARLQAQL-DRLLGATPGNLQPALDW 606

Query: 605  LCDEVGLAAEPAQQLVEYLANACQALGAMPTQHCLVMERFFDATGGTQLIIHSPYGSRIN 664
            L   + L    A+QLV+YLA A  A GA+P+Q  L+MERFFD +GGTQLIIHSP+GSRIN
Sbjct: 607  LTGTLQLNQASAEQLVDYLAPARLAFGALPSQDTLLMERFFDESGGTQLIIHSPFGSRIN 666

Query: 665  RAWGLALRKRFCRTFNFELQAAATEDAIVLSLSTSHSFALEEVARYLHSASAEHVLVQAL 724
            RAWGLALRKRFCRTFNFELQAAA+EDAIVLSLSTSHSF L+EV RYL+S SAE VLVQA+
Sbjct: 667  RAWGLALRKRFCRTFNFELQAAASEDAIVLSLSTSHSFELDEVWRYLNSQSAEQVLVQAV 726

Query: 725  LDAPLFGVRWRWNATNAMALPRFSGGNKVAPQLQRMKSEDLLATVFPDQVACAENLVGER 784
            LDAPLFGVRWRWNA  A+ALPR++GG KVAPQ+QRMKSEDL+A+VFPDQ+AC ENL GER
Sbjct: 727  LDAPLFGVRWRWNAGVALALPRYTGGRKVAPQIQRMKSEDLIASVFPDQIACLENLAGER 786

Query: 785  EVPDHPLVAQTLEDCLHQSMDSEGWLQVLRGLESGAITLVARDLAAPSPLAAEALNARPY 844
            E+PDHPLV QTL+DCLH++MDSEGWL +LR +E+G I L++RDL APSPLAAE L+ARPY
Sbjct: 787  EIPDHPLVEQTLDDCLHEAMDSEGWLTLLRRMEAGEIRLISRDLPAPSPLAAEILSARPY 846

Query: 845  AFLDDAPLEERRTQAVQGRRYT-PQSSDDLGQLDPQAIAAVREEAWPQPRDAEEMHEALV 903
             FLDDAPLEERRTQAV  RR++ PQS+DDLG LD +AI AV++EAWP P   +EMHE L+
Sbjct: 847  TFLDDAPLEERRTQAVINRRWSDPQSTDDLGALDAEAIQAVQDEAWPTPATVDEMHETLM 906

Query: 904  GLGVLPVEEA-LDAQWQAWLSALSAAGRATCLAVDGGTALWISAERIEWFAPLYPHAVAQ 962
             L  +   EA   A W  WL  L+ +GRA  + +     LW+  ER+     +YP A  Q
Sbjct: 907  SLACIADHEATAHASWPGWLRTLADSGRACHIQISTERGLWLPLERLTCLQAIYPQASWQ 966

Query: 963  PPLQAPPDCRVDD-WQREWAVRELVRGRLSAVGPAQVSALCSAVRLPAAEVELALIGLQR 1021
            PPL   P    D+ W  + AV EL+R RLSA GP  + A+   + L   +V  AL  L++
Sbjct: 967  PPL--TPLAGFDEAWDPDEAVVELLRARLSAFGPQPLMAIAYPLGLSTPQVTQALAQLEQ 1024

Query: 1022 EGYVMAGRFSAQALEEEWCERHLLARIHRYTLGRLRREIEPVSQRDYARFLFEWQHLDAD 1081
            +GYV+ GRF+    +E+WCERHLLARIHRYT+ RLRREIEPVS +D+ RFLF+WQHL   
Sbjct: 1025 QGYVLRGRFTPGGGQEQWCERHLLARIHRYTVKRLRREIEPVSLKDFMRFLFDWQHLSPA 1084

Query: 1082 HRVAGPDALAGIVGQLEGFEAPAALWESELLPARVRDYQPAWLDELCTAGRTVWARLRPG 1141
             +  G   L  IVGQ EG+ A A+ W+ ELLPAR++DY P WLDELC +G+ VW RL   
Sbjct: 1085 TQGRGAAVLPSIVGQFEGYPAAASAWDGELLPARIKDYSPTWLDELCRSGKLVWTRLNAR 1144

Query: 1142 GGRSGNALRGTPIVLLPRREAQRWNALARADDDAPLGSRAQRVVEVLQEQGALFFDEIAD 1201
               S  ALR TPIVLLPR     W+ LA       L  + Q+V   L E GALFFDE+  
Sbjct: 1145 QKPSAGALRSTPIVLLPRNRVALWSGLAEQTPPGELSLKTQKVHRALSEHGALFFDELLH 1204

Query: 1202 AARLMATELEDVLSELVMRGRVHCDSYAGLRALLVPASKRPSALSRQRRRASALGIRDAG 1261
             A L+ +ELE  L ELV  G V+ DS+AGLRAL+ PASKR +  SR+ R A   G+ DAG
Sbjct: 1205 EAHLLRSELEIALQELVGAGLVNADSFAGLRALITPASKRQARSSRRGRGAFVGGMDDAG 1264

Query: 1262 RWAPVRNLPSLPLAEASER----HQEMLEHVARALLRRYGVVCWRLLEREAAWLPPWREL 1317
            RWA +R   S P  E   R      E LEH+A  LLRRYGVV WR+LEREA WLP WREL
Sbjct: 1265 RWALLRR--SQPAPEEGNRPASTPPETLEHIAMTLLRRYGVVFWRMLEREADWLPSWREL 1322

Query: 1318 LRVYQRLEARGELRGGRFIAGVSGEQFALPDAIAAMRRVRAQPLAQQWICLSASDPANLL 1377
            LR + RLEARGE+RGGRF++G++GEQFALP+AI  +R VR +P     I +   DP NL 
Sbjct: 1323 LRTFHRLEARGEIRGGRFVSGLAGEQFALPEAIPLLREVRRRPTDGSLIAVCGVDPLNLA 1382

Query: 1378 GNLLPGERIARVPGNRVAFLDGLPMAAWSGDRFQPLQELSHE-HGEQALRLLQRG 1431
            G LLPG ++  +  NR+ +LDGLP+AA    +     EL  +   E   +L+Q+G
Sbjct: 1383 GTLLPGAKVPALASNRLVYLDGLPVAAQIAGKQHLWMELDAQGMAEVRNKLIQKG 1437