Pairwise Alignments

Query, 1464 a.a., Lhr-like helicases from Xanthomonas campestris pv. campestris strain 8004

Subject, 1538 a.a., ATP-dependent helicase from Escherichia coli ECRC102

 Score =  595 bits (1533), Expect = e-173
 Identities = 475/1502 (31%), Positives = 687/1502 (45%), Gaps = 195/1502 (12%)

Query: 3    PVLQHFHPVVAAWFGRTFAAPTPAQIAAWPAIKAGRHTLVAAPTGSGKTLTAFLAAIDAL 62
            P+   F P    WF R F  PT  Q   W     G H LV APTGSGKTL AFL A+D L
Sbjct: 10   PLPDVFSPATRDWFLRAFKQPTAVQSQTWHVAARGEHALVIAPTGSGKTLAAFLYALDRL 69

Query: 63   IRDGLAQGGALPDQ--TRVIYVSPLKALSNDIHLNLEAPLHGIRAELLAQGLPDVPVRTA 120
             R+G         +  +R++Y+SP+KAL  D+  NL+ PL GI  E   +G  +V +R  
Sbjct: 70   FREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVG 129

Query: 121  VRTGDTPQRERAQARRVPPHILVTTPESLYVLLGSASGRSALRHVRTVIVDEIHAVAADK 180
            +RTGDTP +ER++  R PP IL+TTPESLY++L S + R  LR V TVI+DE+HAVA  K
Sbjct: 130  IRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRA-RETLRGVETVIIDEVHAVAGSK 188

Query: 181  RGSHLALTLERLQRLAEQPITRVGLSATQKPIDTVAQFLVGVGEDGAAAPCEIVDIGYTR 240
            RG+HLAL+LERL  L      R+GLSAT +    VA FL      G   P  +V+    R
Sbjct: 189  RGAHLALSLERLDALLHTSAQRIGLSATVRSASDVAAFL------GGDRPVTVVNPPAMR 242

Query: 241  QRDLALALPPTPLSVVLS--------------NDQWLQVYAEVAALAQQHRTTLVFVNTR 286
               + + +P   +  V S                 W  +   +     +HR+T+VF N+R
Sbjct: 243  HPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDEVLRHRSTIVFTNSR 302

Query: 287  RMAERAARHLGELLGKQ-----RVAA--------------------------HHGSLSRE 315
             +AE+    L EL   +      +AA                          HHGS+S+E
Sbjct: 303  GLAEKLTARLNELYAARLQRSPSIAADAAHFESTSGATSNRVQSSDVFIARSHHGSVSKE 362

Query: 316  TRLLAERRLKAGELTVLVATASLELGLDIGDVDLVCQLGSPRSIATFLQRAGRSGHAVGG 375
             R + E+ LK+GEL  +VAT+SLELG+D+G V+LV Q+ +P S+A+ LQR GR+GH +GG
Sbjct: 363  QRAITEQALKSGELRCVVATSSLELGIDMGAVELVIQVATPLSVASGLQRIGRAGHQIGG 422

Query: 376  TPKARLFPQTRDELVECAALLDGIRRGELDALRFPIAPIDVLAQQIVAEAACEDWDEDAL 435
              K   FP+TR +LV+ A +++ +  G L+ L  P  P+DVLAQ  VA AA +    D  
Sbjct: 423  ISKGLFFPRTRRDLVDSAVIVECMFAGRLENLTPPHNPLDVLAQHTVAAAAMDALQVDEW 482

Query: 436  FALVRRAWPFATLSRATFDAVVRMLCEGFSTRLGPRAGYLHRDAVNRR---LHARRGARM 492
            ++ VRRA P+  L R  FDA + ML   + +  G  + +  +   NR    L AR GA++
Sbjct: 483  YSRVRRAAPWKDLPRRVFDATLDMLSGRYPS--GDFSAFRPKLVWNRETGILTARPGAQL 540

Query: 493  TALTSGGTIPETGDYSVVL---EPQA--ENIGTVNEDFAVESLTGDVFQLGNASYRILRV 547
             A+TSGGTIP+ G YSV+L   E QA    +G ++E+   ES   D+  LG  S+RI ++
Sbjct: 541  LAVTSGGTIPDRGMYSVLLPEGEEQAGSRRVGELDEEMVYESRVNDIITLGATSWRIQQI 600

Query: 548  DADKVRVEDAKGAPPNIPFWLGEAPGRSDALSLAVSRLREEIATRLDGARHAGA-QAWLC 606
              D+V V  A G    +PFW GE  GR   L   +      +A   DGA  +G    WL 
Sbjct: 601  TRDQVIVTPAPGRSARLPFWRGEGNGRPAELGEMIGDFLHLLA---DGAFFSGTIPPWLA 657

Query: 607  DEVGLAAEPAQQLVEYLANACQALGAMPTQHCLVMERFFDATGGTQLIIHSPYGSRINRA 666
            +E  +A    Q L++   N   A G +P    LV+ER  D  G  ++I+HSPYG R++  
Sbjct: 658  EENTIA--NIQGLIDEQRN---ATGIVPGSRHLVLERCRDEIGDWRIILHSPYGRRVHEP 712

Query: 667  WGLALRKRFCRTFNFELQAAATEDAIVLSLSTSHSFALEEVARYLHSASAEHVLVQALLD 726
            W LA+  R    +  +    A++D IV  +  +     +             ++ +A+  
Sbjct: 713  WALAIAGRIHALWGADASVVASDDGIVARIPDTDGKLPDAAIFLFEPEKLLQIVREAVGS 772

Query: 727  APLFGVRWRWNATNAMALPRFSGGNKVAPQLQRMKSEDLLATVFPDQVACAENLVGEREV 786
            + LF  R+R  A  A+ +P  + G++     QR+++  LL                 +  
Sbjct: 773  SALFAARFRECAARALLMPGRTPGHRTPLWQQRLRASQLLEIA--------------QGY 818

Query: 787  PDHPLVAQTLEDCLHQSMDSEGWLQVLRGLESGAITLVARDLAAPSPLAAEAL--NARPY 844
            PD P + +TL +CL    D     +++R L  G I +       PSP A   L      +
Sbjct: 819  PDFPAILETLRECLQDVYDLPALERLMRRLNGGEIQISDVTTTTPSPFATSLLFGYVAEF 878

Query: 845  AFLDDAPLEERRTQAV----QGRRYTPQSSDDLGQLDPQAIAAVREE-----AWPQPRDA 895
             +  DAPL ERR   +    +  R      D    LDPQ I  V EE        + +  
Sbjct: 879  MYQSDAPLAERRASVLSLDSELLRNLLGQVDPGELLDPQVIRQVEEELQRLAPGRRAKGE 938

Query: 896  EEMHEALVGLGVLPVE-----------------EALDAQWQAWLSALSAAGRATCLAVDG 938
            E + + L  LG + VE                 E L    + + + +S   R  C+    
Sbjct: 939  EGLFDLLRELGPMTVEDLAQRHTGSSEEIASYLENLLTVKRIFPTMISGQERLACMDDAA 998

Query: 939  GTALWISAERIEWFAPLYPHAVAQPPLQAPPDCRVDDWQREWAVRELVRGRLSAVGPAQV 998
                 +     E    +Y H V+ P                  +R+L    L A      
Sbjct: 999  RLRDALGVRLPESLPEIYLHRVSYP------------------LRDLFLRYLRAHALVTA 1040

Query: 999  SALCSAVRLPAAEVELALIGLQREGYVMAGRFSAQALEEEWCERHLLARIHRYTLGRLRR 1058
              L     L  A VE  L  L+ +G VM         ++ W    +  R+   +L   R 
Sbjct: 1041 EQLAHEFSLGIAIVEEQLQQLREQGLVM------NLQQDIWVSDEVFRRLRLRSLQAARE 1094

Query: 1059 EIEPVSQRDYARFLFEWQHL-------------DADHRVAGPDALAGIVGQLEGFEAPAA 1105
               PV+   YAR L E Q +              +     G D +  ++ QL G   PA+
Sbjct: 1095 ATRPVAATTYARLLLERQGVLPATDGSPALFASTSPGVYEGVDGVMRVIEQLAGVGLPAS 1154

Query: 1106 LWESELLPARVRDYQPAWLDELCTAGRTVWARLRPGGGRSGNALRGTPIVLLPRREAQRW 1165
            LWES++LPARV DY P  LDEL   G  +W+  +  G   G       +V L  +E    
Sbjct: 1155 LWESQILPARVHDYSPEVLDELLATGAVIWSGQKKLGEDDG-------LVALHLQEYAAE 1207

Query: 1166 NALARADDDAPLGSRAQRVVEVLQEQGALFFDEIADAAR------LMATELEDVLSELVM 1219
            +      D A   +  Q +V VL + GA F  +I+   R      +  + L++ L  LV 
Sbjct: 1208 SFTPAEADQANRSALQQAIVAVLADGGAWFAQQISQRIRDKIGESVDPSALQEALWALVW 1267

Query: 1220 RGRVHCDSYAGLRALLVPASKRPSALSRQRR--------------RASALGIRDAGRWAP 1265
            +G +  D +A LRAL   +S   ++  R  R              R S      AGRW  
Sbjct: 1268 QGVITSDIWAPLRALTRSSSNARTSTRRSHRARRGRPVYAQPVSPRVSYNTPNLAGRW-- 1325

Query: 1266 VRNLPSLPLAEASERHQEMLEHVARALLRRYGVVCWR--LLEREAAWLPPWRELLRVYQR 1323
                 SL   E     + ML  +A  +L RYG++  +  + E      P  + L R    
Sbjct: 1326 -----SLLQVEPLNDTERMLA-LAENMLDRYGIISRQAVIAENIPGGFPSMQTLCR---S 1376

Query: 1324 LEARGELRGGRFIAGVSGEQFALPDAIAAMRRVRAQPLAQQW---ICLSASDPANLLGNL 1380
            +E  G +  GRF+ G+ G QFA    I  +R +  Q    +    + LSA+DPAN+ GNL
Sbjct: 1377 MEDSGRIMRGRFVEGLGGAQFAERLTIDRLRDLATQAAQTRHYTPVALSANDPANVWGNL 1436

Query: 1381 LP 1382
            LP
Sbjct: 1437 LP 1438