Pairwise Alignments

Query, 1464 a.a., Lhr-like helicases from Xanthomonas campestris pv. campestris strain 8004

Subject, 808 a.a., ATP-dependent RNA helicase DbpA from Azospirillum sp. SherDot2

 Score =  239 bits (611), Expect = 6e-67
 Identities = 210/644 (32%), Positives = 296/644 (45%), Gaps = 69/644 (10%)

Query: 33  AIKAGRHTLVAAPTGSGKTLTAFLAAIDALI---RDGLAQGGALPDQTRVIYVSPLKALS 89
           A + G   L+ APTG GKTL  FL ++  L    R+GL            +Y+SPLKAL+
Sbjct: 4   AAERGESALLIAPTGGGKTLAGFLPSLIELAERPREGL----------HTLYISPLKALA 53

Query: 90  NDIHLNLEAPLHGIRAELLAQGLPDVPVRTAVRTGDTPQRERAQARRVPPHILVTTPESL 149
            DI  NLE P+  +R          +P+R   RTGDTP+ +R + R  PPH+L+TTPESL
Sbjct: 54  VDIQRNLEQPIAEMR----------LPIRAENRTGDTPEAKRRRQRTHPPHMLMTTPESL 103

Query: 150 YVLLGSASGRSALRHVRTVIVDEIHAVAADKRGSHLALTLERLQRLAEQPITRVGLSATQ 209
            +LL         R +R VI+DE+HA+A  KRG  LAL L RL RLA     RVGLSAT 
Sbjct: 104 ALLLSYTDADKLFRTLRCVIIDELHALAGTKRGDLLALGLARLSRLAPAA-RRVGLSATV 162

Query: 210 KPIDTVAQFLVGVGEDGAAAPCEIVDIGYTRQRDLALALPPTPLSVVLSNDQWLQVYAEV 269
              + +  +L   G    +   ++  +         + +  +   V  +    +    E+
Sbjct: 163 AEPERLLAWLSRRGRHDGSDSDDVRLVLGRSGAQAEVEILTSQERVPWAGHMAMHAMKEI 222

Query: 270 AALAQQHRTTLVFVNTRRMAERAARHLGELLGKQR-VAAHHGSLSRETRLLAERRLKAGE 328
               ++ RTTL+FVNTR  AE   + L  +      +A HHGSL+ E R   E  +  GE
Sbjct: 223 YERVRRQRTTLLFVNTRAQAELVFQALWRVNDDNLPIALHHGSLAVEQRRKVEGAMARGE 282

Query: 329 LTVLVATASLELGLDIGDVDLVCQLGSPRSIATFLQRAGRSGHAVGGTPKARLFPQTRDE 388
           L  +VAT+SL+LG+D   VDLV Q+G+P+  +  +QR GR+ H +    +A L P  R E
Sbjct: 283 LRAVVATSSLDLGIDWAAVDLVVQIGAPKGSSRLVQRIGRANHRLDEPSRALLVPANRFE 342

Query: 389 LVECAALLDGIRRGELDALRFPIAPIDVLAQQIVAEAACEDWDEDALFALVRRAWPFATL 448
           ++EC A L+ +    LD        +DVL+Q ++  A    +  D L+  V  A P+A +
Sbjct: 343 VLECRAALEAVHDHTLDGEAPRPGGLDVLSQHLLGMACAAPFLPDQLYEEVVSAAPYAAM 402

Query: 449 SRATFDAVVRMLCEGFSTRLGPRAGYLHRDAVNRRLHARRGARMTAL---------TSGG 499
           +R  FD V+      F T  G   G   R    +RL  R   RM             + G
Sbjct: 403 TRDEFDDVL-----DFVTTGGYALGAYDR---FQRLKLREDGRMAVAGPAVARQYRMNVG 454

Query: 500 TIPETGDYSVVLEPQAENIGTVNEDFAVESLTGDVFQLGNASYRILRVDADKVRVEDAKG 559
           TI +     V L  +   +G V E F      GD F       + L V   + +V     
Sbjct: 455 TITQEALLRVRLN-RGPVLGEVEEYFIQGLTPGDTFLFAGQLLKFLGVREMEAQVAKGGT 513

Query: 560 APPNIPFWLGEAPGRSDALSLAVSRLREEIA--TRLDGARHAGAQAW---------LCDE 608
             P +P + G   GR    +    R+R  +A   + DG      Q W         L + 
Sbjct: 514 GDPKVPAYAG---GRLPLSTHLAERVRAMLADPRQWDGLPE-DVQEWLRLQRHRSVLPNR 569

Query: 609 VGLAAEP-----AQQLVEYL---ANACQALGAMPTQHCLVMERF 644
            GL  E       Q LV Y     NA Q LG + T+    MERF
Sbjct: 570 DGLLVETFPKAGKQFLVAYAFEGRNAHQTLGMLLTRR---MERF 610