Pairwise Alignments

Query, 436 a.a., RND efflux system, membrane fusion protein CmeA from Xanthomonas campestris pv. campestris strain 8004

Subject, 384 a.a., antibiotic transporter from Pseudomonas simiae WCS417

 Score =  265 bits (678), Expect = 1e-75
 Identities = 152/386 (39%), Positives = 218/386 (56%), Gaps = 15/386 (3%)

Query: 11  ACAITVALAACSKPEQQQAPPPPEVSVLEMKPQTLPLERDLVGRLSAFRSADVRARVDGV 70
           A A+   L+ C K E       P+V V+ ++PQ   L  +L GR +A+R A+VR +V+G+
Sbjct: 13  AVALASLLSGCKKEEAAPPAQIPQVGVVTIQPQAFTLTSELPGRTTAYRIAEVRPQVNGI 72

Query: 71  LLKRLYTEGTDVKEGQPLFEIDPMPLRATLLQAQGQLAAAEATYANAKIAAQRARSLAPQ 130
           +LKRL+ EG DVKEGQ L++IDP    ATL  AQ  L         +K  + R + L  +
Sbjct: 73  ILKRLFKEGGDVKEGQQLYQIDPSVYEATLKSAQASLT-------QSKSISDRYKQLVDE 125

Query: 131 QYVSRADIDTAEATERSSGASVQQARGVVESASIQLSFASVTSPITGRAGIQRVTEGALV 190
           Q VSR + DTA A   +S A+VQ       +A I + +  V +PI+GR G   VTEGALV
Sbjct: 126 QAVSRQEYDTAVANRMTSEANVQ-------TAQINVRYTKVFAPISGRIGRSSVTEGALV 178

Query: 191 GSGEATLLTTVDQIDPLYVNFAMSSEELAALRQAQSSGNVQLSGDGKSTINVELGNGTQY 250
            +G+A  +  + Q+DP+YV+   SS E+  LR+  +SG ++ +GD  + + + L +G+ Y
Sbjct: 179 SNGQADAMAVIQQLDPIYVDVTQSSAEMLKLRRDLASGQLEKAGDNAAKVKLTLEDGSAY 238

Query: 251 PHPGTLDVSAVTVDPSTGAVSLRATLPNPEMALLPGAFVTFKASLGQRNNAYLVPQQALQ 310
              G L+ S V+VD +TG+V+LRA  PNP+  LLPG FV  +   G  + A L PQQ + 
Sbjct: 239 GVDGKLEFSEVSVDQTTGSVTLRAVFPNPDHTLLPGMFVHAQLQAGVNSKAILAPQQGVT 298

Query: 311 RDATGA-YALVLGKDGKVVRKNLTVDGQQKGQWIVTAGMAPGDQVIVDGVQKAKEGQPAK 369
           RD  G   ALV+  D KV ++ L  +      W+V  G+  GD+VI +G+Q  K G   K
Sbjct: 299 RDLKGTPTALVVNADNKVEQRELVANRTYGAYWLVEKGLNAGDRVITEGLQYVKPGAEVK 358

Query: 370 GVPWDPNKPAQGGQPGAPGAAPAGGQ 395
               D  KPA  G   AP AA   G+
Sbjct: 359 VKAADNAKPADAGSAAAPAAAAGKGE 384