Pairwise Alignments

Query, 436 a.a., RND efflux system, membrane fusion protein CmeA from Xanthomonas campestris pv. campestris strain 8004

Subject, 391 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

 Score =  269 bits (688), Expect = 1e-76
 Identities = 148/363 (40%), Positives = 224/363 (61%), Gaps = 2/363 (0%)

Query: 5   LRTFGLACAITVALAACS-KPEQQQAPPPPEVSVLEMKPQTLPLERDLVGRLSAFRSADV 63
           LR   L   ++++LA CS   E  +  P  +V V  ++ Q L +  +L GR+ A R+A+V
Sbjct: 9   LRPLALMALLSLSLAGCSDSAEPDEQAPTAQVRVETLQLQPLAISSELSGRILAPRTAEV 68

Query: 64  RARVDGVLLKRLYTEGTDVKEGQPLFEIDPMPLRATLLQAQGQLAAAEATYANAKIAAQR 123
           RARV GV+LKR+Y EG+DVK+G  LF IDP P +A    A+  LA AEAT   A++  QR
Sbjct: 69  RARVAGVVLKRVYREGSDVKQGDVLFLIDPAPFKADHDSARATLAKAEATRYQARLQEQR 128

Query: 124 ARSLAPQQYVSRADIDTAEATERSSGASVQQARGVVESASIQLSFASVTSPITGRAGIQR 183
            R L   + VSR + D A+A+   + A V +AR  +E A + L +A+VT+PI+GR G  +
Sbjct: 129 YRELVDDKAVSRQEYDNAKASFLQADAEVAEARAALERARLNLGYATVTAPISGRIGRAQ 188

Query: 184 VTEGALVGSGEATLLTTVDQIDPLYVNFAMSSEELAALRQAQSSGNVQLSGDGKSTINVE 243
           VTEGALVG  E T L T+ Q+DP++ +   S+ EL ALR+A  +G +Q  GDG++   + 
Sbjct: 189 VTEGALVGQNETTPLATIQQLDPIHADVTQSTRELNALRRALRAGELQQVGDGQARATLI 248

Query: 244 LGNGTQYPHPGTLDVSAVTVDPSTGAVSLRATLPNPEMALLPGAFVTFKASLGQRNNAYL 303
             +G+ YP PG L  S ++VDPST  ++LR+  PNP++ LLPG++V  +     +     
Sbjct: 249 QDDGSAYPLPGKLLFSDISVDPSTNQITLRSEFPNPDLDLLPGSYVRVRLEQAVQPKGLS 308

Query: 304 VPQQALQRDATGA-YALVLGKDGKVVRKNLTVDGQQKGQWIVTAGMAPGDQVIVDGVQKA 362
           VPQ+A+ RD+ G    LV+ +  +V  + + +   Q  +WIV+ G+A G++V+V+G+Q  
Sbjct: 309 VPQRAILRDSAGVPKVLVVDQHARVSDRQVVLGSAQGDRWIVSEGLAAGERVVVEGLQHV 368

Query: 363 KEG 365
           K G
Sbjct: 369 KAG 371