Pairwise Alignments

Query, 436 a.a., RND efflux system, membrane fusion protein CmeA from Xanthomonas campestris pv. campestris strain 8004

Subject, 384 a.a., Probable efflux pump periplasmic linker TtgA from Pseudomonas putida KT2440

 Score =  250 bits (639), Expect = 5e-71
 Identities = 145/381 (38%), Positives = 214/381 (56%), Gaps = 16/381 (4%)

Query: 11  ACAITVALAACSKPEQQQAPPPPEVSVLEMKPQTLPLERDLVGRLSAFRSADVRARVDGV 70
           A A+   L+ C K E   A   P+V V+ ++PQ   L  +L GR SA+R A+VR +V+G+
Sbjct: 13  AVALATLLSGCKKEEAAPAAQAPQVGVVTIQPQAFTLTSELPGRTSAYRVAEVRPQVNGI 72

Query: 71  LLKRLYTEGTDVKEGQPLFEIDPMPLRATLLQAQGQLAAAEATYANAKIAAQRARSLAPQ 130
           +LKRL+ EG++VKEGQ L++IDP    ATL  A+  L A  +        A+R + L  +
Sbjct: 73  ILKRLFKEGSEVKEGQQLYQIDPAVYEATLANAKANLLATRSL-------AERYKQLIDE 125

Query: 131 QYVSRADIDTAEATERSSGASVQQARGVVESASIQLSFASVTSPITGRAGIQRVTEGALV 190
           Q VS+ + D A A    + AS++       SA I L +  V +PI+GR G    TEGALV
Sbjct: 126 QAVSKQEYDDANAKRLQAEASLK-------SAQIDLRYTKVLAPISGRIGRSSFTEGALV 178

Query: 191 GSGEATLLTTVDQIDPLYVNFAMSSEELAALRQAQSSGNVQLSGDGKSTINVELGNGTQY 250
            +G+   + T+ Q+DP+YV+   S+ EL  LR+   SG +Q +GD  +++ + L +G+ +
Sbjct: 179 SNGQTDAMATIQQLDPIYVDVTQSTAELLKLRRDLESGQLQKAGDNAASVQLVLEDGSLF 238

Query: 251 PHPGTLDVSAVTVDPSTGAVSLRATLPNPEMALLPGAFVTFKASLGQRNNAYLVPQQALQ 310
              G L+ S V VD +TG+V+LRA  PNP+  LLPG FV  +   G   NA L PQQ + 
Sbjct: 239 KQEGRLEFSEVAVDETTGSVTLRALFPNPDHTLLPGMFVHARLKAGVNANAILAPQQGVT 298

Query: 311 RDATGA-YALVLGKDGKVVRKNLTVDGQQKGQWIVTAGMAPGDQVIVDGVQKAKEGQPAK 369
           RD  GA  ALV+ ++ KV  + L         W++  G+ PGD++I +G+Q  + G   K
Sbjct: 299 RDLKGAPTALVVNQENKVELRQLKASRTLGSDWLIEEGLNPGDRLITEGLQYVRPGVEVK 358

Query: 370 -GVPWDPNKPAQGGQPGAPGA 389
                +  KPA   Q  A  A
Sbjct: 359 VSDATNVKKPAGPDQANAAKA 379