Pairwise Alignments

Query, 436 a.a., RND efflux system, membrane fusion protein CmeA from Xanthomonas campestris pv. campestris strain 8004

Subject, 385 a.a., anaerobic multidrug efflux transporter, ArcA-regulated from Escherichia coli BL21

 Score =  252 bits (644), Expect = 1e-71
 Identities = 142/356 (39%), Positives = 209/356 (58%), Gaps = 3/356 (0%)

Query: 18  LAACS-KPEQQQAPPPPEVSVLEMKPQTLPLERDLVGRLSAFRSADVRARVDGVLLKRLY 76
           L AC  K  +  A   PEV V+ + P ++ +  +L GR   +  A++R +V G+++KR +
Sbjct: 18  LTACDDKSAENAAAMTPEVGVVTLSPGSVNVLSELPGRTVPYEVAEIRPQVGGIIIKRNF 77

Query: 77  TEGTDVKEGQPLFEIDPMPLRATLLQAQGQLAAAEATYANAKIAAQRARSLAPQQYVSRA 136
            EG  V +G  L++IDP PL+A L  A+G LA A +T +NA+I   R  SL    YVSR 
Sbjct: 78  IEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQ 137

Query: 137 DIDTAEATERSSGASVQQARGVVESASIQLSFASVTSPITGRAGIQRVTEGALVGSGEAT 196
           D DTA      + A+V  A+  VE A+I L +A+VTSPITG +G   VT GALV + +A 
Sbjct: 138 DYDTARTQLNEAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQAD 197

Query: 197 LLTTVDQIDPLYVNFAMSSEELAALRQAQSSGNVQLSGDGKSTINVELGNGTQYPHPGTL 256
            L TV ++DP+YV+   S ++   +++  +SG ++    G + + + L NG +Y   GTL
Sbjct: 198 SLVTVQRLDPIYVDLTQSVQDFLRMKEEVASGQIK-QVQGSTPVQLNLENGKRYSQTGTL 256

Query: 257 DVSAVTVDPSTGAVSLRATLPNPEMALLPGAFVTFKASLGQRNNAYLVPQQALQRDATG- 315
             S  TVD +TG+V+LRA  PNP   LLPG +VT     G R N  LVPQ+ +  +A G 
Sbjct: 257 KFSDPTVDETTGSVTLRAIFPNPNGDLLPGMYVTALVDEGSRQNVLLVPQEGVTHNAQGK 316

Query: 316 AYALVLGKDGKVVRKNLTVDGQQKGQWIVTAGMAPGDQVIVDGVQKAKEGQPAKGV 371
           A AL+L KD  V  + +        QW+VT+G+  GD+VIV G+Q+ + G  A+ +
Sbjct: 317 ATALILDKDDVVQLREIEASKAIGDQWVVTSGLQAGDRVIVSGLQRIRPGIKARAI 372