Pairwise Alignments

Query, 436 a.a., RND efflux system, membrane fusion protein CmeA from Xanthomonas campestris pv. campestris strain 8004

Subject, 397 a.a., multidrug efflux system from Escherichia coli BL21

 Score =  266 bits (680), Expect = 9e-76
 Identities = 150/379 (39%), Positives = 223/379 (58%), Gaps = 7/379 (1%)

Query: 15  TVALAACS-KPEQQQAPPPPEVSVLEMKPQTLPLERDLVGRLSAFRSADVRARVDGVLLK 73
           ++AL  C  K  QQ     P V V+ +K + L +  +L GR SA+R A+VR +V G++LK
Sbjct: 19  SLALTGCDDKQAQQGGQQMPAVGVVTVKTEPLQITTELPGRTSAYRIAEVRPQVSGIILK 78

Query: 74  RLYTEGTDVKEGQPLFEIDPMPLRATLLQAQGQLAAAEATYANAKIAAQRARSLAPQQYV 133
           R + EG+D++ G  L++IDP   +AT   A+G LA A+A    A++   R + L   QY+
Sbjct: 79  RNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYI 138

Query: 134 SRADIDTAEATERSSGASVQQARGVVESASIQLSFASVTSPITGRAGIQRVTEGALVGSG 193
           S+ + D A A  + + A+V  A+  VE+A I L++  VTSPI+GR G   VTEGALV +G
Sbjct: 139 SKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNG 198

Query: 194 EATLLTTVDQIDPLYVNFAMSSEELAALRQAQSSGNVQLSGDGKSTINVELGNGTQYPHP 253
           +AT L TV Q+DP+YV+   SS +   L+Q  ++G ++   +GK+ +++   +G ++P  
Sbjct: 199 QATALATVQQLDPIYVDVTQSSNDFLRLKQELANGTLK-QENGKAKVSLITSDGIKFPQD 257

Query: 254 GTLDVSAVTVDPSTGAVSLRATLPNPEMALLPGAFVTFKASLGQRNNAYLVPQQALQRDA 313
           GTL+ S VTVD +TG+++LRA  PNP+  LLPG FV  +   G   NA LVPQQ + R  
Sbjct: 258 GTLEFSDVTVDQTTGSITLRAIFPNPDHTLLPGMFVRARLEEGLNPNAILVPQQGVTRTP 317

Query: 314 TG-AYALVLGKDGKVVRKNLTVDGQQKGQWIVTAGMAPGDQVIVDGVQKAKEGQPAKGVP 372
            G A  LV+G D KV  + +        +W+VT G+  GD+V++ G+QK + G   K   
Sbjct: 318 RGDATVLVVGADDKVETRPIVASQAIGDKWLVTEGLKAGDRVVISGLQKVRPGVQVKA-- 375

Query: 373 WDPNKPAQGGQPGAPGAAP 391
                 A   Q  A GA P
Sbjct: 376 --QEVTADNNQQAASGAQP 392