Pairwise Alignments

Query, 622 a.a., Protein-export membrane protein SecD (TC 3.A.5.1.1) from Xanthomonas campestris pv. campestris strain 8004

Subject, 624 a.a., Protein-export membrane protein SecD (TC 3.A.5.1.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  451 bits (1161), Expect = e-131
 Identities = 264/628 (42%), Positives = 392/628 (62%), Gaps = 34/628 (5%)

Query: 9   MLEFPRWKYFLILVVLAVSALYALPNVYQKDPSVQITASRGA-QLDDALRSRIDADLKSA 67
           M  +P WKY +IL+VL +SALYALPN++ + P+VQ++A+R   ++D    +R++  L + 
Sbjct: 1   MNRYPLWKYAIILIVLLISALYALPNLFGESPAVQVSAARSTVRIDAGTVTRVEQALAAQ 60

Query: 68  GITPKAVTREGDSLMVRLPTLQAQTRANDVLRQQLGEN-----YTVALNLASTVPDWLAK 122
            I    +  + +S+  R  +   Q +A D L +    +     + VALNL    P WLA 
Sbjct: 61  NIQSNRIQLDANSVKARFDSTDDQLKARDALEKAFNPDPADASHVVALNLLPRTPSWLAS 120

Query: 123 LGGRPMVLGLDLVGGVHFAMQVDQKAALEKRLEGFAEDIRTTLRDGRIAYRSVERRGDNS 182
           LG  PM LGLDL GGVHF +QVD +AAL +R +  A D+RT LR+  + +  + R G  +
Sbjct: 121 LGASPMYLGLDLRGGVHFMLQVDMQAALLRRADVLATDLRTLLREKGLRHGGINRSGQ-T 179

Query: 183 IQVSLGE----GASADAARTALAKSQPTLTYDVSGQTISVKVPEAELKQIASGAIEQNLT 238
           I++  G+    GA+ D  RT     Q T T D   + +    PEA  +++   A++QN+T
Sbjct: 180 IELRAGDAQTLGAARDLIRTQFTDLQLTETADF--RLVGTISPEAA-RRVQEQALKQNIT 236

Query: 239 TLRNRVNALGVSEPTIQRQGEDRIVVELPGLQDTAEAKRLIGATASLEFRAVVEG-NAED 297
           TL NR+N LGV+EP IQ+QG DRIVV+LPG+QDTA+AK ++G TA+LE R V E  +A+ 
Sbjct: 237 TLHNRINELGVAEPVIQQQGADRIVVQLPGVQDTAKAKDILGRTATLEVRMVDESVDAQA 296

Query: 298 AVR-SGTIPPEAKVYRLRDSNAPVLLNKRALVTGDQMVSASVSND-QNGMPAVAVTLNNV 355
           A R +G +P  A+ Y  R   + V++ +  L+TG+ +  A    D Q    AV +TL+  
Sbjct: 297 AARGTGPVPFGAERYPERGGQS-VVVKREVLLTGENLTDAQAGFDSQTQEAAVHLTLDAK 355

Query: 356 AGQRMLDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKEEALSPTRIAGVFGKNFQ 415
             +   D T  NVGK M+++  E+        G+        E   +P     + G   Q
Sbjct: 356 GARVFRDVTRENVGKRMAIILFEK--------GRG-------EVVTAPVIRGEIGGGRVQ 400

Query: 416 TTGLEKT-EAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVFSFVFTLVF 474
            +G   T EA + A LL++GSLAAPM+ +EE  IGPSLGAEN+ +G  +V++ F+  +VF
Sbjct: 401 ISGAMTTVEANDTALLLRAGSLAAPMEIIEERTIGPSLGAENITKGFHSVLWGFIAIVVF 460

Query: 475 FTVYYRMFGAITSVALLFNLLIVIAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERI 534
             VYY MFG  +S+AL FN+L++++++S+  AT+TLPG A +AL++G+++D+NVLINER+
Sbjct: 461 MCVYYAMFGVFSSIALGFNVLLLVSLLSMLQATLTLPGIAAMALALGMAIDSNVLINERV 520

Query: 535 REELRLGVPPKSAIVAGYEKAGGTILDANLTGLIVGVALYAFGTGPLKGFALTMIIGIFA 594
           REELR G  P+ AI AGY+ A  TILD+N+T LI G+AL  FG+GP++GFA+   +GI  
Sbjct: 521 REELRRGSSPQMAINAGYDHAWSTILDSNVTSLIAGIALLIFGSGPVRGFAVVHCLGILT 580

Query: 595 SMFTAITVSRALAVLIYGSRKKLKSVAI 622
           SMF+++  SR +  L YG +KKLK+V+I
Sbjct: 581 SMFSSVFFSRGVVNLWYGRQKKLKTVSI 608