Pairwise Alignments

Query, 673 a.a., Excinuclease ABC subunit B from Xanthomonas campestris pv. campestris strain 8004

Subject, 673 a.a., exision nuclease of nucleotide excision repair, DNA damage recognition component from Escherichia coli BL21

 Score =  909 bits (2349), Expect = 0.0
 Identities = 458/673 (68%), Positives = 550/673 (81%), Gaps = 2/673 (0%)

Query: 1   MTDRFELVSPYSPAGDQPAAIDKLVANFEAGLAKQTLLGVTGSGKTYTIANVVQQVQKPT 60
           M+  F+L S + P+GDQP AI +L    E GLA QTLLGVTGSGKT+TIANV+  +Q+PT
Sbjct: 1   MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPT 60

Query: 61  LVMAPNKTLAAQLYGEFKSFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINEHIE 120
           +V+APNKTLAAQLYGE K FFP NAVEYFVSYYDYYQPEAYVPSSDTFIEKD+S+NEHIE
Sbjct: 61  MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE 120

Query: 121 QMRLSATKTLLSRRDSLVVATVSAIYGLGAPEDYLSLRLILSIGEHIDQRQLIRHLTDLQ 180
           QMRLSATK +L RRD +VVA+VSAIYGLG P+ YL + L L++G  IDQR ++R L +LQ
Sbjct: 121 QMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180

Query: 181 YTRNEFELTRGAFRVRGEVLDVFPAESDTEALRIELFDGDIEQLTLFDPLTGETLRKLQR 240
           Y RN+    RG FRVRGEV+D+FPAESD  ALR+ELFD ++E+L+LFDPLTG+ +  + R
Sbjct: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240

Query: 241 YTVYPKTHYATTRERTLSAVDTIKEELKERLEQLYSQNKLVEAQRLAQRTQFDLEMMAEV 300
           +T+YPKTHY T RER + A++ IKEEL  R + L   NKL+E QRL QRTQFDLEMM E+
Sbjct: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300

Query: 301 GFCNGIENYSRHLTGKAPGEPPPTLFDYLPPDALLVIDESHVTIPQIGAMYKGDRSRKET 360
           G+C+GIENYSR L+G+ PGEPPPTLFDYLP D LLV+DESHVTIPQIG MY+GDR+RKET
Sbjct: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360

Query: 361 LVEFGFRLPSALDNRPLRFEEWEARSPRSIYVSATPGPYELRESAGEITELVVRPTGLID 420
           LVE+GFRLPSALDNRPL+FEE+EA +P++IYVSATPG YEL +S G++ + VVRPTGL+D
Sbjct: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420

Query: 421 PVVEIRPVGTQVDDLMSEVHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVRYLHSDI 480
           P++E+RPV TQVDDL+SE+ +R  + +RVLVTTLTKRMAE+LTEYL EHG RVRYLHSDI
Sbjct: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480

Query: 481 DTVERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSTGSLIQTIG 540
           DTVER+EIIRDLRLG+FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRS  SLIQTIG
Sbjct: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540

Query: 541 RAARNLRGKAILYADKMTRSMQAAIDETDRRREKQVEYNLEHGITPKSVARPISDIMEGA 600
           RAARN+ GKAILY DK+T SM  AI ET+RRREKQ +YN EHGITP+ + + + DI+   
Sbjct: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDIL-AL 599

Query: 601 REDAAEKKAGKGRSKSRQVAEEPADYRAMGPAEIAGKLKALEQKMYQHAKDLEFEAAAQI 660
            ++ A+ KA KGR KSR + E       M P  +  K+  LE  M QHA++LEFE AAQI
Sbjct: 600 GQNIAKTKA-KGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQI 658

Query: 661 RDQILKLKAASLA 673
           RDQ+ +L+   +A
Sbjct: 659 RDQLHQLRELFIA 671