Pairwise Alignments

Query, 308 a.a., tRNA pseudouridine synthase B (EC 4.2.1.70) from Xanthomonas campestris pv. campestris strain 8004

Subject, 314 a.a., tRNA pseudouridine(55) synthase TruB from Escherichia coli ECOR38

 Score =  228 bits (580), Expect = 2e-64
 Identities = 135/307 (43%), Positives = 181/307 (58%), Gaps = 11/307 (3%)

Query: 2   RPRITFRPLHGILLLDKPAGLSSNNALQAARRLLRAEKGGHTGSLDPLATGLLPLCFGEA 61
           RPR   R ++G+LLLDKP G+SSN+ALQ  +R+  A + GHTG+LDPLATG+LP+C GEA
Sbjct: 3   RPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEA 62

Query: 62  TKIAGLLLGSAKAYDAEIVLGVTTDTDDADGQPLRERSVPALSEAALQAALAPFIGRIQQ 121
           TK +  LL S K Y     LG  TDT DADGQ + ER V   S   L AAL  F G I+Q
Sbjct: 63  TKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQ 121

Query: 122 QAPIYSALKQGGEPLYAKARRGEVIEAPVREVEVHAITLTSYASPRLRLRVTCGSGTYIR 181
              +YSALK  G+ LY  AR+G  +    R + V+ +    +    L L + C  GTYIR
Sbjct: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIR 181

Query: 182 SLARDLGEVLGCGAHIAALRRVWVEPFRTPEMITLEALTALVESGAD----AAQ----LL 233
           ++  DLGE LGCGAH+  LRR+ V  +    M+TLE L  LVE        AA+    LL
Sbjct: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241

Query: 234 LPVAAGLSDFAQITLDATLAARFRMGQRLRDPAFP-EGQVAVFDAD-GSPAGLGLVDADG 291
           +P+ +  SD+  + L  T +  F+ G  +R    P EG V V + + G   G+G +D +G
Sbjct: 242 MPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEG 301

Query: 292 RLSPQRL 298
           R++P+RL
Sbjct: 302 RVAPRRL 308