Pairwise Alignments

Query, 642 a.a., DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) from Xanthomonas campestris pv. campestris strain 8004

Subject, 557 a.a., RNA helicase from Pseudomonas simiae WCS417

 Score =  481 bits (1239), Expect = e-140
 Identities = 283/596 (47%), Positives = 367/596 (61%), Gaps = 41/596 (6%)

Query: 1   MTQESSAPLLFADLGLSDAVMKAVAAVGYETPSPIQAATIPALLAGRDVLGQAQTGTGKT 60
           MTQE+     FA   L+  ++ AVAA GYE PS IQ  +IP ++AG+D++GQAQTGTGKT
Sbjct: 1   MTQETGG---FAAFNLNPNILAAVAATGYEEPSAIQQQSIPIIMAGKDMIGQAQTGTGKT 57

Query: 61  AAFALPVLSNADLNQVKPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQ 120
           AAFALP+L   D  + +PQAL+LAPTRELA+QVA AF+ YA+ +PG  V+ VYGG P   
Sbjct: 58  AAFALPILHCIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGP 117

Query: 121 QLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKL 180
           QL A++ G  +VV TPGR+ DHL R    LS +  LVLDEADEML++GF+DD+E + K L
Sbjct: 118 QLKAIRNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKAL 177

Query: 181 PEKRQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALT 240
           P  RQ  LFSAT+P +IR IA+ +L+DP  V I  KT T   I Q +  V    K  A+ 
Sbjct: 178 PPTRQTVLFSATLPQSIRAIAERHLRDPEHVKIQTKTQTVTAIEQAHLLVHADQKTSAVL 237

Query: 241 RILEVEPFDGMIIFARTKAATEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLD 300
            +LEVE FD +I+F RTK AT +LA  L+A+G  AAA+NGD+ Q  RE+ I  LKDG+LD
Sbjct: 238 SLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLD 297

Query: 301 ILVATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGML 360
           I+VATDVAARGLDV R++HV N D+PYD ESYVHRIGRTGRAGR G A+L VTPRE+ ML
Sbjct: 298 IVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRML 357

Query: 361 RAIERATRQPIEEMQLPSVDAVNDTRVARFMTRITETLAGGQIEMYRDLLQRYESENN-V 419
           + IER T Q + E++LP   AV D R+ +    ++  +A  +   + DLL R  ++    
Sbjct: 358 QVIERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAE-STHGDLLDRLTADIGCT 416

Query: 420 PAIDIAAAMAKLLQGDAPFLLTPPVRGAREDFAPRERNDRADRGERPRFEPKFERGPRAP 479
           P    AA + K   G A  L       A E   P   N  A RG+RP          R+ 
Sbjct: 417 PRALAAALLRKATNGQALTL------AAIEKERPLVPNS-APRGDRPE---------RSG 460

Query: 480 DGERGARPPRPDRPAYGEDAGAERPRREPSAPRGEPEFGMESYRIEVGHTHGVKPANIVG 539
           D        RPDR         +R RR P  P  E   G    R  +G   G+   N++G
Sbjct: 461 D--------RPDR--------GDRERRAP-VPLAE---GRARCRTALGARDGIAAKNLLG 500

Query: 540 AIANEAGLESRYIGRIDIQDDYSILDLPADMPRELLTHLKKVWVSGQQLNMRKLEE 595
           AI NE GL    IGRI ++D +S+++LP D   +LL  LK   V+G+QL +R+  E
Sbjct: 501 AILNEGGLAREAIGRIQVRDSFSLVELPEDGLEKLLAKLKDTRVAGKQLKLRRYRE 556