Pairwise Alignments

Query, 642 a.a., DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) from Xanthomonas campestris pv. campestris strain 8004

Subject, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

 Score =  316 bits (809), Expect = 2e-90
 Identities = 171/381 (44%), Positives = 244/381 (64%), Gaps = 11/381 (2%)

Query: 11  FADLGLSDAVMKAVAAVGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLS- 69
           FA LGLS+A+++A+ A GY  P+P+Q   IPA+L GRD++  AQTGTGKT  FALP+L  
Sbjct: 3   FASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILER 62

Query: 70  -----NADLNQV----KPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQ 120
                + D +Q     +P+ LVL PTRELA QV ++F+ YA  +P      ++GG     
Sbjct: 63  LFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSAC-IFGGVGMNP 121

Query: 121 QLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKL 180
           Q+ A+ +GV V+V  PGR++D   +G +DL+ ++ LVLDEAD ML MGFI DV+ VL +L
Sbjct: 122 QIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLARL 181

Query: 181 PEKRQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALT 240
           P KRQ  LFSAT    I  +A   L +P  + +    TT   I QR + +   HK   L 
Sbjct: 182 PAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALLA 241

Query: 241 RILEVEPFDGMIIFARTKAATEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLD 300
            ++ +  ++ +++F RTK     LA+ L+ +GL AAAI+G+  Q AR K +A  K   + 
Sbjct: 242 HLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANSVR 301

Query: 301 ILVATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGML 360
           +LVATD+AARGLD++++ HV+N+++P   E YVHRIGRTGRAGR+G+AI  V P E+ +L
Sbjct: 302 VLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKLL 361

Query: 361 RAIERATRQPIEEMQLPSVDA 381
           ++IER T+Q I +  L   DA
Sbjct: 362 KSIERVTKQRIADGDLMGFDA 382