Pairwise Alignments

Query, 642 a.a., DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) from Xanthomonas campestris pv. campestris strain 8004

Subject, 559 a.a., ATP-dependent DEAD-box RNA helicase DeaD from Pseudomonas putida KT2440

 Score =  490 bits (1262), Expect = e-143
 Identities = 281/595 (47%), Positives = 371/595 (62%), Gaps = 37/595 (6%)

Query: 1   MTQESSAPLLFADLGLSDAVMKAVAAVGYETPSPIQAATIPALLAGRDVLGQAQTGTGKT 60
           MTQE+     FA L L+  ++ AV A GYE PS IQ  +IP +LAG D++GQAQTGTGKT
Sbjct: 1   MTQETGG---FAALDLNPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKT 57

Query: 61  AAFALPVLSNADLNQVKPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQ 120
           AAFALP+L+  D+++ +PQAL+LAPTRELA+QVA AF+ YA+ +PG  V+ VYGG P   
Sbjct: 58  AAFALPILNKIDVSKREPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGP 117

Query: 121 QLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKL 180
           QL A++ G  +VV TPGR+ DHL R    LS ++ LVLDEADEML++GF+DD+E +   +
Sbjct: 118 QLRAIRNGAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAI 177

Query: 181 PEKRQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALT 240
           P  RQ  LFSAT+P +IR IA+ +L++P  V I  KT T   I Q +  V    K+ A+ 
Sbjct: 178 PATRQTVLFSATLPSSIRSIAERHLREPKHVKIQTKTQTVTAIEQAHLMVHADQKIPAVL 237

Query: 241 RILEVEPFDGMIIFARTKAATEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLD 300
           R+LEVE FD +I F RTK AT +LA  L+A+G  AAA+NGD+ Q  RE+ I  LKDG+LD
Sbjct: 238 RLLEVEEFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLD 297

Query: 301 ILVATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGML 360
           I+VATDVAARGLDV R++HV N D+PYD ESYVHRIGRTGRAGR+G A+L VTPRE+ ML
Sbjct: 298 IVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRML 357

Query: 361 RAIERATRQPIEEMQLPSVDAVNDTRVARFMTRITETLAGGQIEMYRDLLQRYESENNVP 420
           + IER T Q + E +LP+  AV D R+ +  + +   +A  +   + +L  R  ++    
Sbjct: 358 QVIERVTGQKVAEARLPNAQAVLDARIKKLTSSLAPLVAEAEAT-HGELFDRLTTDLGCS 416

Query: 421 AIDIAAAMAKLLQGDAPFLLTPPVRGAREDFAPRERNDRADRGERPRFEPKFERGPRAPD 480
           A  +A+A           LL     G   D A  ER       E+P       RG R   
Sbjct: 417 ARALASA-----------LLRKATNGQALDLAAVER-------EQPLVPSFAPRGERTER 458

Query: 481 GERGARPPRPDRPAYGEDAGAERPRREPSAPRGEPEFGMESYRIEVGHTHGVKPANIVGA 540
           GERG RP R DR            RR P  P  E   G    R  +G   G+   N++GA
Sbjct: 459 GERGERPDRGDRE-----------RRAP-LPLAE---GRVRCRTALGARDGIAAKNLLGA 503

Query: 541 IANEAGLESRYIGRIDIQDDYSILDLPADMPRELLTHLKKVWVSGQQLNMRKLEE 595
           I NE GL    IGRI ++D +S+++LP D   +LL+ LK   V+G+QL +R+  E
Sbjct: 504 ILNEGGLARDAIGRIQVRDSFSLVELPEDGLEKLLSKLKDTRVAGKQLKLRRYRE 558