Pairwise Alignments

Query, 642 a.a., DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) from Xanthomonas campestris pv. campestris strain 8004

Subject, 629 a.a., ATP-dependent RNA helicase from Escherichia coli BL21

 Score =  537 bits (1383), Expect = e-157
 Identities = 297/592 (50%), Positives = 388/592 (65%), Gaps = 40/592 (6%)

Query: 11  FADLGLSDAVMKAVAAVGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 70
           FADLGL   +++A+  +GYE PSPIQA  IP LL GRDVLG AQTG+GKTAAF+LP+L N
Sbjct: 8   FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67

Query: 71  ADLNQVKPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKRGVH 130
            D     PQ LVLAPTRELA+QVAEA   +++ + G  V+ +YGGQ Y  QL AL++G  
Sbjct: 68  LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQ 127

Query: 131 VVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVALFS 190
           +VVGTPGR++DHL RGTLDLS+L  LVLDEADEMLRMGFI+DVE ++ ++PE  Q ALFS
Sbjct: 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFS 187

Query: 191 ATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDG 250
           ATMP AIRRI + ++K+P EV I +  TT  +I Q YW V G+ K +AL R LE E FD 
Sbjct: 188 ATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDA 247

Query: 251 MIIFARTKAATEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAAR 310
            IIF RTK AT E+A+ L+  G  +AA+NGDM QA RE+T+ +LKDG+LDIL+ATDVAAR
Sbjct: 248 AIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAAR 307

Query: 311 GLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRAIERATRQP 370
           GLDVER+S V+NYDIP D+ESYVHRIGRTGRAGR G A+LFV  RE+ +LR IER  +  
Sbjct: 308 GLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367

Query: 371 IEEMQLPSVDAVNDTRVARFMTRITETLAGGQIEMYRDLLQRYESENNVPAIDI---AAA 427
           I E++LP+ + +   R+ +F  ++ + L    ++ YR LL + +       +D+   AAA
Sbjct: 368 IPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAA 427

Query: 428 MAKLLQGDAPFLLTP--PVRGAREDFAPRERNDRADRGERPRFEPKFERGPRAPDGERGA 485
           + K+ QG+   ++ P  P+R        RE  DR DRG R R              +RG 
Sbjct: 428 LLKMAQGERTLIVPPDAPMR------PKREFRDRDDRGPRDR-------------NDRGP 468

Query: 486 RPPRPDRPAYGEDAGAERPRREPSAPRGEPEFGMESYRIEVGHTHGVKPANIVGAIANEA 545
           R  R DRP         R RR+           M+ YRIEVG   GV+  +IVGAIANE 
Sbjct: 469 RGDREDRP--------RRERRDVG--------DMQLYRIEVGRDDGVEVRHIVGAIANEG 512

Query: 546 GLESRYIGRIDIQDDYSILDLPADMPRELLTHLKKVWVSGQQLNMRKLEEGE 597
            + SRYIG I +   +S ++LP  MP E+L H  +  +  + +NM+ L + +
Sbjct: 513 DISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQ 564