Pairwise Alignments

Query, 1155 a.a., Transcription-repair coupling factor from Xanthomonas campestris pv. campestris strain 8004

Subject, 1149 a.a., transcription-repair coupling factor from Pseudomonas simiae WCS417

 Score = 1245 bits (3222), Expect = 0.0
 Identities = 644/1155 (55%), Positives = 835/1155 (72%), Gaps = 12/1155 (1%)

Query: 4    PTFPSPPLPKSGQLRAYWRAPSSPTALAWSIARAAEAHAGPVLVIARDNQSAHQIEADLH 63
            P    P LP +   + +   P +  AL+ +IA AA A     L++  D+QSA ++E +L 
Sbjct: 2    PVLRLPLLPAAAGKQHWGNLPGA--ALSLAIAEAASAAKRFTLLLTADSQSAERLEQELS 59

Query: 64   ALLGDASALPVVPFPDWETLPYDQFSPHPEIISQRLAALHRLPGLTRGVVIVPVQTLLQQ 123
                D   LPV+ FPDWETLPYD FSPH +IISQR+A+L+RLP L  GV++VP+ T L +
Sbjct: 60   FFAPD---LPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELAHGVLVVPITTALHR 116

Query: 124  LAPLSYIVGGSFDLTVGQRLDLDAEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVFPMGA 183
            LAP  +++G S  L +GQ+LD++  + RLE++GYR V  V + G+FAVRG L+D+FPMG+
Sbjct: 117  LAPTKFLLGSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGS 176

Query: 184  DTPLRIELLDEDIDSIRAFDPESQRSLDKVDAVKMLPGREVPMDDASVERVLACLRERFD 243
              P RI+L D++I+++R FDPE+QRS+DKVD+VK+LP RE P+   +V R  A  RERFD
Sbjct: 177  KLPYRIDLFDDEIETLRTFDPENQRSIDKVDSVKLLPAREFPLQKDAVTRFKARFRERFD 236

Query: 244  VDTRRSALYQDLKSGIAPSGVEYYLPMFFSKTATLFDYL--DTRVLPLIATGVSNAADAF 301
            VD RR  ++QDL SGI P+G+EYYLP+FF +T+TLFDYL  DT+V  L   G+  AA+ F
Sbjct: 237  VDFRRCPIFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSL--PGIEQAAENF 294

Query: 302  WLQAQNRYEQRRHDVERPLLPPDELYQSPDALRERLNKLARIEVWPADHPRSDEAAPLGD 361
            W   +NRYE+RR D  RPLLPP EL+   +    RL    R+     D            
Sbjct: 295  WNDVRNRYEERRVDPSRPLLPPAELFLPVEDCFARLKSWPRVVASQQDVETGAGRERFPA 354

Query: 362  QPLPPLPVAAKDAPAGQALASFLGHYPGRVLVAADSAGRREALMEVLAAAQLKPDVVADL 421
              LP L + AK     +AL++FLG +PGRVL  A+SAGRRE L+E+L   +L+P  V   
Sbjct: 355  ATLPDLAIQAKATQPLEALSNFLGDFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSW 414

Query: 422  PAFLAATKLRFGITVAPLEDGFALDTPQIAVLTERQLFPERANQPRRT-RRVGREPEAII 480
            P F+ + K R  IT+APL++G  LD P +A++ E  LF +R  Q RR  +R     +A+I
Sbjct: 415  PDFVKS-KERLAITIAPLDEGLLLDDPALALIAESPLFGQRVMQRRRREKRADANNDAVI 473

Query: 481  RDLGELSEGAPIVHEDHGVGRYRGLIVLDAGGMPGEFLEIEYAKGDRLYVPVAQLHLISR 540
            ++L EL EGAP+VH DHGVGRY GL  L+      EFL +EYA+G +LYVPVA LHLI+R
Sbjct: 474  KNLTELREGAPVVHIDHGVGRYLGLQTLEIDNQAAEFLTMEYAEGAKLYVPVANLHLIAR 533

Query: 541  YSGASADTAPLHSLGGEQWTKAKRKAAEKVRDVAAELLEIQARRRARAGLALQVDRAMYE 600
            Y+G+    APLH LG E W KAKRKAAE+VRDVAAELL+I ARR AR G A    +A Y 
Sbjct: 534  YTGSDDALAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYA 593

Query: 601  PFAAGFPFEETTDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQ 660
             F+AGF FEET DQ   I+A   D+ + +PMDR+VCGDVGFGKTEVA+RAAF A   GKQ
Sbjct: 594  TFSAGFAFEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQ 653

Query: 661  VAVLVPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVASGDIDVIIGTH 720
            VA+LVPTTLLA+QHY +FRDRFAD+P+ VEV+SRFKS KE+ A +  +A G ID++IGTH
Sbjct: 654  VAILVPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAIADLAEGKIDIVIGTH 713

Query: 721  RLLQPDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGLR 780
            +LL  DVK K+LGLV++DEE RFGVRQKE LKA+R+ V +LTLTATPIPRTLNMA++G+R
Sbjct: 714  KLLSDDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMR 773

Query: 781  DLSIIATPPPNRLAVQTFITAWDNTLLREAFQRELSRGGQLYFLHNDVESIVRMQRDLSE 840
            DLSIIATPP  RL+V+TF+   + + ++EA  REL RGGQ+Y+LHNDV++I +   DL+E
Sbjct: 774  DLSIIATPPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAE 833

Query: 841  LVPEARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNANTIIINRADRF 900
            LVPEARI I HGQM ERELE+VM DF  +RFNVL+++TIIE+GID+P+ANTIII RAD+F
Sbjct: 834  LVPEARIAIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKF 893

Query: 901  GLAQLHQLRGRVGRSHHRAYAYLVVPDRRSMTSDAEKRLEAIASMDELGAGFTLATHDLE 960
            GLAQLHQLRGRVGRSHH+AYAYL+ P R+ +TSDAEKRLEAIA+  +LGAGF LAT+DLE
Sbjct: 894  GLAQLHQLRGRVGRSHHQAYAYLLTPPRQQITSDAEKRLEAIANTQDLGAGFVLATNDLE 953

Query: 961  IRGAGELLGEDQSGQMAEVGFSLYTELLERAVRSIRQGKLPDLDAGEEVRGAEVELHVAS 1020
            IRGAGELLG+ QSGQ+  VGF+LY E+LERAV++IR+G+ P+LD      G E+ L + +
Sbjct: 954  IRGAGELLGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQ-PLGGGPEINLRLPA 1012

Query: 1021 LIPEDYLPDVHTRLTLYKRISSARDSDALRELQVEMIDRFGLLPDPVKHLFAIAELKLQA 1080
            LIPE+YLPDVH RL LYKRI+SA D + L++LQVEMIDRFGLLP+P K+L  +  LKLQA
Sbjct: 1013 LIPEEYLPDVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQA 1072

Query: 1081 NALGVRKLDLGENGGRLVFEAKPSIDPMTVIQMIQKQPKIYTMDGPDKLRIKLPLPEAAD 1140
              LG++K+D G  GGR+ FEA+  +DP+ +I++IQ QP  Y  +G    +  +P+  A +
Sbjct: 1073 EQLGIKKVDAGPQGGRIEFEAQTPVDPLVLIKLIQGQPNRYKFEGATLFKFMVPMERAEE 1132

Query: 1141 RFKAARGLLTALAPR 1155
            RF     L   L P+
Sbjct: 1133 RFNTLEALFERLIPK 1147