Pairwise Alignments

Query, 1155 a.a., Transcription-repair coupling factor from Xanthomonas campestris pv. campestris strain 8004

Subject, 1149 a.a., transcription-repair coupling factor from Pseudomonas putida KT2440

 Score = 1252 bits (3240), Expect = 0.0
 Identities = 646/1134 (56%), Positives = 833/1134 (73%), Gaps = 18/1134 (1%)

Query: 29   ALAWSIARAAEAHAGPVLVIARDNQSAHQIEADLHALLGDASALPVVPFPDWETLPYDQF 88
            AL+ +IA AA +     L++  D+Q+A ++E +L     D   LPV+PFPDWETLPYD F
Sbjct: 25   ALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRFFAPD---LPVLPFPDWETLPYDLF 81

Query: 89   SPHPEIISQRLAALHRLPGLTRGVVIVPVQTLLQQLAPLSYIVGGSFDLTVGQRLDLDAE 148
            SPH +IISQR+A+L+RLP L+ G+++VP+ T L +LAP  +++G S  L VGQ +D++  
Sbjct: 82   SPHQDIISQRIASLYRLPELSHGILVVPITTALHRLAPTRFLLGSSLVLDVGQTIDVEQM 141

Query: 149  KRRLESAGYRNVPQVMDPGDFAVRGGLLDVFPMGADTPLRIELLDEDIDSIRAFDPESQR 208
            + RLE++GYR V  V + G+FAVRG L+D+FPMG+  P RI+L D +I+++R FDPE+QR
Sbjct: 142  RLRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYRIDLFDNEIETLRTFDPETQR 201

Query: 209  SLDKVDAVKMLPGREVPMDDASVERVLACLRERFDVDTRRSALYQDLKSGIAPSGVEYYL 268
            S+DKVD+V++LP RE PM    V R  A  RERFDVD RRSA++QDL SGI P+G+EYYL
Sbjct: 202  SIDKVDSVRLLPAREFPMQKEEVTRFKARFRERFDVDFRRSAIFQDLASGIIPAGIEYYL 261

Query: 269  PMFFSKTATLFDYLDTRVLPLIATGVSNAADAFWLQAQNRYEQRRHDVERPLLPPDELYQ 328
            P+FF +T+TLFDYL T        GV  AA+ FW   + RYE RR D+ RPLLPP EL+ 
Sbjct: 262  PLFFEETSTLFDYLPTDTQVFSLPGVEQAAEHFWNDVRGRYEDRRGDLSRPLLPPAELFL 321

Query: 329  SPDALRERLNKLARIEVWPADHPRSDEAAP-LGDQPLPP--LPVAAKDAPAGQALA---S 382
              +      +  AR++ WP     S+E  P +G +  P   LP  A +A A Q LA   +
Sbjct: 322  PVE------DCFARLKQWPRVVVSSEELEPGVGRERFPARALPNLAIEAKANQPLAELAN 375

Query: 383  FLGHYPGRVLVAADSAGRREALMEVLAAAQLKPDVVADLPAFLAATKLRFGITVAPLEDG 442
            FL  +PGRVL  A+SAGRRE L+E+L   +L+P  V     F+   + R  IT+APL+DG
Sbjct: 376  FLDQFPGRVLFTAESAGRREVLLELLERLKLRPHTVEGWDDFITGAE-RLAITIAPLDDG 434

Query: 443  FALDTPQIAVLTERQLFPERANQPRRTRRVGREP-EAIIRDLGELSEGAPIVHEDHGVGR 501
              LD P +A++ E  LF +R  Q RR  + G    +A+I++L EL EGAP+VH DHGVGR
Sbjct: 435  LLLDDPGLALIAESPLFGQRVMQRRRRDKRGETANDAVIKNLTELREGAPVVHIDHGVGR 494

Query: 502  YRGLIVLDAGGMPGEFLEIEYAKGDRLYVPVAQLHLISRYSGASADTAPLHSLGGEQWTK 561
            Y GL  L+  G   EFL +EYA+  +LYVPVA LHLI+RY+G+    APLH LG E W K
Sbjct: 495  YLGLATLEIDGQAAEFLTLEYAENAKLYVPVANLHLIARYTGSDDALAPLHRLGSEAWQK 554

Query: 562  AKRKAAEKVRDVAAELLEIQARRRARAGLALQVDRAMYEPFAAGFPFEETTDQLAAIDAT 621
            AKRKAAE+VRDVAAELL+I ARR AR G A     A Y  F+AGFPFEET DQ AAI+A 
Sbjct: 555  AKRKAAEQVRDVAAELLDIYARRAARKGYAFADPSADYATFSAGFPFEETPDQQAAIEAV 614

Query: 622  LRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVLVPTTLLAEQHYRNFRDR 681
              D+ + +PMDR+VCGDVGFGKTEVA+RAAF A  +G+QVAVLVPTTLLA+QHY +FRDR
Sbjct: 615  RADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPTTLLAQQHYNSFRDR 674

Query: 682  FADYPMKVEVLSRFKSTKEIKAELEKVASGDIDVIIGTHRLLQPDVKFKDLGLVVVDEEQ 741
            FAD+P+ VEV+SRFKS KE+ A    +A G ID++IGTH+LLQ DV+FKDLGL ++DEE 
Sbjct: 675  FADWPVTVEVMSRFKSAKEVAAAAADLAEGKIDILIGTHKLLQDDVRFKDLGLAIIDEEH 734

Query: 742  RFGVRQKEALKAMRANVHLLTLTATPIPRTLNMAMAGLRDLSIIATPPPNRLAVQTFITA 801
            RFGVRQKE LKA+R+ V +LTLTATPIPRTLNMA+AG+RDLSIIATPP  RL+V+TF+  
Sbjct: 735  RFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIATPPARRLSVRTFVME 794

Query: 802  WDNTLLREAFQRELSRGGQLYFLHNDVESIVRMQRDLSELVPEARIGIAHGQMPERELER 861
             + + ++EA  REL RGGQ+Y+LHNDV++I +   DL+ELVPEARIGI HGQM ERELE+
Sbjct: 795  QNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARIGIGHGQMRERELEQ 854

Query: 862  VMLDFQKQRFNVLLSTTIIESGIDIPNANTIIINRADRFGLAQLHQLRGRVGRSHHRAYA 921
            VM DF  +RFNVL+++TIIE+GID+P+ANTI+I RAD+FGLAQLHQLRGRVGRSHH+AYA
Sbjct: 855  VMSDFYHKRFNVLVASTIIETGIDVPSANTIVIERADKFGLAQLHQLRGRVGRSHHQAYA 914

Query: 922  YLVVPDRRSMTSDAEKRLEAIASMDELGAGFTLATHDLEIRGAGELLGEDQSGQMAEVGF 981
            YL+ P R+ +++DAEKRLEAIA+  +LGAGF LAT+DLEIRGAGELLGE QSGQ+  VGF
Sbjct: 915  YLLTPTRQKVSADAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELLGEGQSGQIQAVGF 974

Query: 982  SLYTELLERAVRSIRQGKLPDLDAGEEVRGAEVELHVASLIPEDYLPDVHTRLTLYKRIS 1041
            +LY E+LERAV++IR+G  P+L+      G E+ L + +LIPEDYLPDVH RL LYKRI+
Sbjct: 975  TLYMEMLERAVKAIRKGTQPNLEQ-PLGGGPEINLRLPALIPEDYLPDVHARLILYKRIA 1033

Query: 1042 SARDSDALRELQVEMIDRFGLLPDPVKHLFAIAELKLQANALGVRKLDLGENGGRLVFEA 1101
            SA D + L++LQVEMIDRFGLLP+P K+L  +  LKL A  LG++K+D G NGG+L FEA
Sbjct: 1034 SAADEEGLKDLQVEMIDRFGLLPEPTKNLMRLTSLKLHAEKLGIKKVDAGPNGGKLEFEA 1093

Query: 1102 KPSIDPMTVIQMIQKQPKIYTMDGPDKLRIKLPLPEAADRFKAARGLLTALAPR 1155
            +  +DP+T+I++IQ QPK Y  +G  + R  +P+    +RF     L   L P+
Sbjct: 1094 ETPVDPLTLIKLIQGQPKRYKFEGATQFRFLVPMERPDERFNTLEALFERLTPQ 1147