Pairwise Alignments

Query, 1155 a.a., Transcription-repair coupling factor from Xanthomonas campestris pv. campestris strain 8004

Subject, 1160 a.a., Transcription-repair coupling factor from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 1043 bits (2698), Expect = 0.0
 Identities = 561/1098 (51%), Positives = 743/1098 (67%), Gaps = 22/1098 (2%)

Query: 69   ASALPVVPFPDWETLPYDQFSPHPEIISQRLAALHRLPGLTRG----VVIVPVQTLLQQL 124
            A  L    FPDWETLPYD FSPH ++IS+RLA L R+    +     VV++P  T L +L
Sbjct: 61   APGLRCALFPDWETLPYDTFSPHQDLISERLATLWRISQRDKDTGADVVLIPATTALYRL 120

Query: 125  APLSYIVGGSFDLTVGQRLDLDAEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVFPMGAD 184
            AP S++ G +F   V Q+LD    K +L  AGY++V QV+ PG++AVRGGL+D+FPMG+ 
Sbjct: 121  APPSFLAGYTFHFKVKQKLDEARLKGQLTLAGYQHVTQVVSPGEYAVRGGLIDLFPMGSL 180

Query: 185  TPLRIELLDEDIDSIRAFDPESQRSLDKVDAVKMLPGREVPMDDASVERVLACLRERFDV 244
             P R++L D++IDSIR FDP+SQRSL  V+ V++LPGRE PMDDA+  +  +  RE  + 
Sbjct: 181  VPYRVDLFDDEIDSIRTFDPDSQRSLYPVNEVRLLPGREFPMDDAARAKFRSRWRELLEG 240

Query: 245  DTRRSALYQDLKSGIAPSGVEYYLPMFFSKTATLFDYLDTRVLPLIATGVSNAADAFWLQ 304
            D  +S +Y+D+ +G+A +G+EYYLP+FF  TAT+FDYL T    ++   +  A   FW  
Sbjct: 241  DPTKSRIYKDIGNGVATAGIEYYLPLFFDDTATVFDYLGTDATVVLHGDLEPAFQRFWQD 300

Query: 305  AQNRYEQRRHDVERPLLPPDELYQSPDALRERLNKLARIEVWPA--DHPRSDEAAPLGDQ 362
             ++R+   R D ERP+LPP+ L+ + +    R N+ A+  V PA  D         LGD 
Sbjct: 301  TKDRHRLLRGDAERPVLPPEALFLATEQFYTRANEHAQYVVRPAQQDIEHGAHVQKLGDL 360

Query: 363  PLPPLPVAAKDAPAGQALASFLGHYPGRVLVAADSAGRREALMEVLAAAQLKPDVVADLP 422
             +    V   + P  + L + + +   RVL+ A+S GRRE+L++ L A+ + P     L 
Sbjct: 361  SV----VRGAEDPLAR-LQAHIRNTAHRVLLLAESDGRRESLLDFLRASGVHPPAFDSLA 415

Query: 423  AFLAATKLRFGITVAPLEDGFALDTPQIAVLTERQLFPERANQPRRTRRVG-REPEAIIR 481
             F A+ + + GI  A L  GF+     I  +TE +LF       RR ++    + +A+I+
Sbjct: 416  EFQASDE-KTGIATAALAVGFSWLDDGIDFVTETELFAAGPTTRRRRKQEQVSDVDALIK 474

Query: 482  DLGELSEGAPIVHEDHGVGRYRGLIVLDAG-----GMPG--EFLEIEYAKGDRLYVPVAQ 534
            DL EL+ G P+VH  HG+GRYRGL+ +D G     G P   EFL +EYA    LYVPV+Q
Sbjct: 475  DLSELNVGDPVVHNAHGIGRYRGLVNMDMGEKNPDGSPALQEFLHLEYADKAVLYVPVSQ 534

Query: 535  LHLISRYSGASADTAPLHSLGGEQWTKAKRKAAEKVRDVAAELLEIQARRRARAGLALQV 594
            L LI RY+G SAD APLH LG  QW KAKRKAAE+VRD AAELL I ARR AR G A + 
Sbjct: 535  LQLIGRYTGVSADEAPLHKLGSGQWDKAKRKAAEQVRDAAAELLNIYARRAARQGHAFRY 594

Query: 595  DRAMYEPFAAGFPFEETTDQLAAIDATLRDLGSSQPMDRVVCGDVGFGKTEVAVRAAFAA 654
                YE FA  F FEET DQ  AI A ++D+ S +PMDR+VCGDVGFGKTEVA+RAAF A
Sbjct: 595  SAQDYEVFANDFGFEETADQRGAIHAVIQDMISPRPMDRLVCGDVGFGKTEVALRAAFVA 654

Query: 655  ASAGKQVAVLVPTTLLAEQHYRNFRDRFADYPMKVEVLSRFKSTKEIKAELEKVASGDID 714
             + G+QVA L PTTLLAEQH++   DRF+ +P+KV  +SRF+S KEI A  + +A G +D
Sbjct: 655  VTGGRQVAFLAPTTLLAEQHFQTLSDRFSKWPVKVAEMSRFRSAKEITAAAKGLADGSVD 714

Query: 715  VIIGTHRLLQPDVKFKDLGLVVVDEEQRFGVRQKEALKAMRANVHLLTLTATPIPRTLNM 774
            +++GTH+LL   VKFKDLGL+++DEE RFGVR KEA+KA+RA V +LTLTATPIPRTL M
Sbjct: 715  IVVGTHKLLSESVKFKDLGLLIIDEEHRFGVRHKEAMKALRAEVDVLTLTATPIPRTLGM 774

Query: 775  AMAGLRDLSIIATPPPNRLAVQTFITAWDNTLLREAFQRELSRGGQLYFLHNDVESIVRM 834
            A+ GLRDLS+IAT P  RLA++TF+    N ++REA  REL RGGQ+YFLHN+VE+I   
Sbjct: 775  ALEGLRDLSVIATAPQRRLAIKTFVRNEGNGVIREAVLRELKRGGQVYFLHNEVETIENR 834

Query: 835  QRDLSELVPEARIGIAHGQMPERELERVMLDFQKQRFNVLLSTTIIESGIDIPNANTIII 894
            ++ L E++PEARI IAHGQMPERELERVM DF  QRFNVLL +TIIE+GID+P ANTI++
Sbjct: 835  RQKLEEILPEARIAIAHGQMPERELERVMRDFVAQRFNVLLCSTIIETGIDVPTANTIVM 894

Query: 895  NRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPDRRSMTSDAEKRLEAIASMDELGAGFTL 954
            +RAD+FGLAQLHQLRGRVGRSHH+AYAYL+VPD   +T  A +RL+AI  M+ELG+GF L
Sbjct: 895  SRADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDIEGLTKHAAQRLDAIQQMEELGSGFYL 954

Query: 955  ATHDLEIRGAGELLGEDQSGQMAEVGFSLYTELLERAVRSIRQGKLPDLDAGEEVRGAEV 1014
            A HDLEIRGAGE+LGE QSG M EVGF LY E+L  AV S++ G+ PDL +   V   ++
Sbjct: 955  AMHDLEIRGAGEVLGEHQSGNMLEVGFQLYNEMLSEAVSSLKAGREPDLLSPLSVT-TDI 1013

Query: 1015 ELHVASLIPEDYLPDVHTRLTLYKRISSARDSDALRELQVEMIDRFGLLPDPVKHLFAIA 1074
             LH  +L+P DY  DVH RL+ YK++++A+ +D +  L  E++DRFG LP   + L  + 
Sbjct: 1014 NLHAPALLPNDYCGDVHLRLSFYKKLATAKSTDQVDALLEEIVDRFGKLPPQAQTLIDVH 1073

Query: 1075 ELKLQANALGVRKLDLGENGGRLVFEAKPSIDPMTVIQMIQKQPKIYTMDGPDKLRIKLP 1134
             L+  +   GV K+D       + F A P  +PM +I++IQK   I  + G DKLRI+ P
Sbjct: 1074 RLRCISTPYGVVKVDAAPGVTNITFRANPPFEPMRIIELIQKNRHI-KLAGNDKLRIERP 1132

Query: 1135 LPEAADRFKAARGLLTAL 1152
            LPE  DR +  R +L +L
Sbjct: 1133 LPEVKDRVQLVRDVLRSL 1150