Pairwise Alignments

Query, 1155 a.a., Transcription-repair coupling factor from Xanthomonas campestris pv. campestris strain 8004

Subject, 1148 a.a., Transcription-repair coupling factor from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 1119 bits (2894), Expect = 0.0
 Identities = 584/1125 (51%), Positives = 780/1125 (69%), Gaps = 9/1125 (0%)

Query: 29   ALAWSIARAAEAHAGPVLVIARDNQSAHQIEADLHALLGDASALPVVPFPDWETLPYDQF 88
            A A  +A  AE HAGPV++IA D Q+A ++  ++           V+   DWETLPYD F
Sbjct: 26   ACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIRQFTDQM----VMNLADWETLPYDSF 81

Query: 89   SPHPEIISQRLAALHRLPGLTRGVVIVPVQTLLQQLAPLSYIVGGSFDLTVGQRLDLDAE 148
            SPH EIIS RL+ L++LP + RGV+IVPV TL+Q++ P SY+ G +  +  GQRL  DA 
Sbjct: 82   SPHQEIISSRLSTLYQLPSMQRGVLIVPVNTLMQRVCPHSYLHGHALVMKKGQRLSRDAL 141

Query: 149  KRRLESAGYRNVPQVMDPGDFAVRGGLLDVFPMGADTPLRIELLDEDIDSIRAFDPESQR 208
            + +L+SAGYR+V QVM+ G++A RG LLD+FPMG++ P R++  D++IDS+R FD ++QR
Sbjct: 142  RAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQPYRLDFFDDEIDSLRLFDADTQR 201

Query: 209  SLDKVDAVKMLPGREVPMDDASVERVLACLRERFDVDTRRSALYQDLKSGIAPSGVEYYL 268
            +L++V+A+ +LP  E P D A++E   +  R+ F+V      +YQ +  G  P+G+EY+ 
Sbjct: 202  TLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDAEHIYQQVSKGTLPAGIEYWQ 261

Query: 269  PMFFSKTAT-LFDYLDTRVLPLIATGVSNAADAFWLQAQNRYEQRRHDVERPLLPPDELY 327
            P+FFS+    LF Y     L +    +  +A+ F      R+E R  D  RPLLPP+ L+
Sbjct: 262  PLFFSEPLPPLFSYFPANTLVVNTGSLETSAERFQADTLARFENRGVDPMRPLLPPEALW 321

Query: 328  QSPDALRERLNKLARIEVWPADHPRSDEAAPLGDQPLPPLPVAAKDAPAGQALASFLGHY 387
               D L   L +  R+++     P       LG Q LP L + A+      AL  FL  +
Sbjct: 322  LRVDELFSELKRWPRLQLKTDHLPEKAANTNLGFQKLPDLAIQAQQKAPLDALRKFLESF 381

Query: 388  PGRVLVAADSAGRREALMEVLAAAQLKPDVVADLPAFLAATKLRFGITVAPLEDGFALDT 447
             G V+ + +S GRREAL E+LA  ++ P  +  L     A +    + +   E GF    
Sbjct: 382  SGPVIFSVESEGRREALGELLARIKIAPKRILRLDEAQDAGRY---LMIGAAEHGFIDTQ 438

Query: 448  PQIAVLTERQLFPERANQPRRTRRVGREPEAIIRDLGELSEGAPIVHEDHGVGRYRGLIV 507
              +A++ E  L  ER  + R   R    P+ +IR+L EL  G P+VH +HGVGRY G+  
Sbjct: 439  RNLALICESDLLGERVARRRLDSRRTINPDTLIRNLAELHVGQPVVHLEHGVGRYAGMTT 498

Query: 508  LDAGGMPGEFLEIEYAKGDRLYVPVAQLHLISRYSGASADTAPLHSLGGEQWTKAKRKAA 567
            L+AGG+ GE+L + YA   +LYVPV+ LHLISRY+G + ++APLH LGG+ W++A++KAA
Sbjct: 499  LEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEESAPLHKLGGDAWSRARQKAA 558

Query: 568  EKVRDVAAELLEIQARRRARAGLALQVDRAMYEPFAAGFPFEETTDQLAAIDATLRDLGS 627
            EKVRDVAAELL+I A+R A+ G A + DR  Y+ F   FPFE T DQ  AI+A L D+  
Sbjct: 559  EKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQ 618

Query: 628  SQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVLVPTTLLAEQHYRNFRDRFADYPM 687
               MDR+VCGDVGFGKTEVA+RAAF A    KQVAVLVPTTLLA+QHY NFRDRFA++P+
Sbjct: 619  PLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPV 678

Query: 688  KVEVLSRFKSTKEIKAELEKVASGDIDVIIGTHRLLQPDVKFKDLGLVVVDEEQRFGVRQ 747
            ++E+LSRF+S KE    L + A G ID++IGTH+LLQ DVK +DLGL++VDEE RFGVR 
Sbjct: 679  RIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKLRDLGLLIVDEEHRFGVRH 738

Query: 748  KEALKAMRANVHLLTLTATPIPRTLNMAMAGLRDLSIIATPPPNRLAVQTFITAWDNTLL 807
            KE +KAMRA+V +LTLTATPIPRTLNMAM+G+RDLSIIATPP  RLAV+TF+  +D+ ++
Sbjct: 739  KERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVV 798

Query: 808  REAFQRELSRGGQLYFLHNDVESIVRMQRDLSELVPEARIGIAHGQMPERELERVMLDFQ 867
            REA  RE+ RGGQ+Y+L+NDVE+I +    L+ELVPEARI I HGQM ERELERVM DF 
Sbjct: 799  REAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFH 858

Query: 868  KQRFNVLLSTTIIESGIDIPNANTIIINRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPD 927
             QRFNVL+ TTIIE+GIDIP ANTIII RAD FGLAQLHQLRGRVGRSHH+AYA+L+ P 
Sbjct: 859  HQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918

Query: 928  RRSMTSDAEKRLEAIASMDELGAGFTLATHDLEIRGAGELLGEDQSGQMAEVGFSLYTEL 987
             ++MT+DA+KRLEAIAS+++LGAGF LATHDLEIRGAGELLGE+QSG M  +GFSLY EL
Sbjct: 919  PKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMEL 978

Query: 988  LERAVRSIRQGKLPDLDAGEEVRGAEVELHVASLIPEDYLPDVHTRLTLYKRISSARDSD 1047
            LE AV +++ G+ P L+     +  EVEL + SL+P+D++PDV+TRL+ YKRI+SA++ +
Sbjct: 979  LENAVDALKAGREPSLE-DLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKNEN 1037

Query: 1048 ALRELQVEMIDRFGLLPDPVKHLFAIAELKLQANALGVRKLDLGENGGRLVFEAKPSIDP 1107
             L E++VE+IDRFGLLPDP ++L  IA L+ QA  LG+RKL+  E GG + F  K  +DP
Sbjct: 1038 ELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLEGNEKGGTIEFAEKNHVDP 1097

Query: 1108 MTVIQMIQKQPKIYTMDGPDKLRIKLPLPEAADRFKAARGLLTAL 1152
              +I ++QKQP+ + +DGP +L+    L E   R    R  +  L
Sbjct: 1098 AWLIGLLQKQPQHFRLDGPTRLKFIQDLSERKTRIDWVRQFMQQL 1142