Pairwise Alignments

Query, 1155 a.a., Transcription-repair coupling factor from Xanthomonas campestris pv. campestris strain 8004

Subject, 1148 a.a., transcription-repair coupling factor from Escherichia coli BL21

 Score = 1124 bits (2907), Expect = 0.0
 Identities = 591/1125 (52%), Positives = 784/1125 (69%), Gaps = 9/1125 (0%)

Query: 29   ALAWSIARAAEAHAGPVLVIARDNQSAHQIEADLHALLGDASALPVVPFPDWETLPYDQF 88
            A A  +A  AE HAGPV++IA D Q+A +    LH  +   +   V+   DWETLPYD F
Sbjct: 26   ACATLVAEIAERHAGPVVLIAPDMQNALR----LHDEISQFTDQMVMNLADWETLPYDSF 81

Query: 89   SPHPEIISQRLAALHRLPGLTRGVVIVPVQTLLQQLAPLSYIVGGSFDLTVGQRLDLDAE 148
            SPH +IIS RL+ L++LP + RGV+IVPV TL+Q++ P S++ G +  +  GQRL  DA 
Sbjct: 82   SPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDAL 141

Query: 149  KRRLESAGYRNVPQVMDPGDFAVRGGLLDVFPMGADTPLRIELLDEDIDSIRAFDPESQR 208
            + +L+SAGYR+V QVM+ G++A RG LLD+FPMG++ P R++  D++IDS+R FD +SQR
Sbjct: 142  RTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQR 201

Query: 209  SLDKVDAVKMLPGREVPMDDASVERVLACLRERFDVDTRRSALYQDLKSGIAPSGVEYYL 268
            +L++V+A+ +LP  E P D A++E   +  R+ F+V      +YQ +  G  P+G+EY+ 
Sbjct: 202  TLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQ 261

Query: 269  PMFFSKTAT-LFDYLDTRVLPLIATGVSNAADAFWLQAQNRYEQRRHDVERPLLPPDELY 327
            P+FFS+    LF Y     L +    + N+A+ F      R+E R  D  RPLLPP  L+
Sbjct: 262  PLFFSEPLPPLFSYFPANTLLVNTGDLENSAERFQADTLARFENRGVDPMRPLLPPQSLW 321

Query: 328  QSPDALRERLNKLARIEVWPADHPRSDEAAPLGDQPLPPLPVAAKDAPAGQALASFLGHY 387
               D L   L    R+++     P     A LG + LP L V A+      AL  FL  +
Sbjct: 322  LRVDELFSELKNWPRVQLKTEHLPTKAANANLGFEKLPDLAVQAQQKAPLDALRKFLESF 381

Query: 388  PGRVLVAADSAGRREALMEVLAAAQLKPDVVADLPAFLAATKLRFGITVAPLEDGFALDT 447
             G V+ + +S GRREAL E+LA  ++ P  +  L    A+ + R+ + +   E GF    
Sbjct: 382  DGPVVFSVESEGRREALGELLARIKIAPQRIMRLDE--ASDRGRY-LMIGAAEHGFVDKV 438

Query: 448  PQIAVLTERQLFPERANQPRRTRRVGREPEAIIRDLGELSEGAPIVHEDHGVGRYRGLIV 507
              +A++ E  L  ER  + R+  R    P+ +IR+L EL  G P+VH +HGVGRY G+  
Sbjct: 439  RNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTT 498

Query: 508  LDAGGMPGEFLEIEYAKGDRLYVPVAQLHLISRYSGASADTAPLHSLGGEQWTKAKRKAA 567
            L+AGG+ GE+L + YA   +LYVPV+ LHLISRY+G + + APLH LGG+ W++A++KAA
Sbjct: 499  LEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAA 558

Query: 568  EKVRDVAAELLEIQARRRARAGLALQVDRAMYEPFAAGFPFEETTDQLAAIDATLRDLGS 627
            EKVRDVAAELL+I A+R A+ G A + DR  Y+ F   FPFE T DQ  AI+A L D+  
Sbjct: 559  EKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQ 618

Query: 628  SQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVLVPTTLLAEQHYRNFRDRFADYPM 687
               MDR+VCGDVGFGKTEVA+RAAF A    KQVAVLVPTTLLA+QHY NFRDRFA++P+
Sbjct: 619  PLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPV 678

Query: 688  KVEVLSRFKSTKEIKAELEKVASGDIDVIIGTHRLLQPDVKFKDLGLVVVDEEQRFGVRQ 747
            ++E++SRF+S KE    L +VA G ID++IGTH+LLQ DVKFKDLGL++VDEE RFGVR 
Sbjct: 679  RIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRH 738

Query: 748  KEALKAMRANVHLLTLTATPIPRTLNMAMAGLRDLSIIATPPPNRLAVQTFITAWDNTLL 807
            KE +KAMRANV +LTLTATPIPRTLNMAM+G+RDLSIIATPP  RLAV+TF+  +D+ ++
Sbjct: 739  KERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVV 798

Query: 808  REAFQRELSRGGQLYFLHNDVESIVRMQRDLSELVPEARIGIAHGQMPERELERVMLDFQ 867
            REA  RE+ RGGQ+Y+L+NDVE+I +    L+ELVPEARI I HGQM ERELERVM DF 
Sbjct: 799  REAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFH 858

Query: 868  KQRFNVLLSTTIIESGIDIPNANTIIINRADRFGLAQLHQLRGRVGRSHHRAYAYLVVPD 927
             QRFNVL+ TTIIE+GIDIP ANTIII RAD FGLAQLHQLRGRVGRSHH+AYA+L+ P 
Sbjct: 859  HQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918

Query: 928  RRSMTSDAEKRLEAIASMDELGAGFTLATHDLEIRGAGELLGEDQSGQMAEVGFSLYTEL 987
             ++MT+DA+KRLEAIAS+++LGAGF LATHDLEIRGAGELLGE+QSG M  +GFSLY EL
Sbjct: 919  PKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMEL 978

Query: 988  LERAVRSIRQGKLPDLDAGEEVRGAEVELHVASLIPEDYLPDVHTRLTLYKRISSARDSD 1047
            LE AV +++ G+ P L+        EVEL + SL+P+D++PDV+TRL+ YKRI+SA+  +
Sbjct: 979  LENAVDALKAGREPSLE-DLTSHQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTEN 1037

Query: 1048 ALRELQVEMIDRFGLLPDPVKHLFAIAELKLQANALGVRKLDLGENGGRLVFEAKPSIDP 1107
             L E++VE+IDRFGLLPDP + L  IA L+ QA  LG+RKL+  E GG + F  K  ++P
Sbjct: 1038 ELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNP 1097

Query: 1108 MTVIQMIQKQPKIYTMDGPDKLRIKLPLPEAADRFKAARGLLTAL 1152
              +I ++QKQP+ Y +DGP +L+    L E   R +  R  +  L
Sbjct: 1098 AWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMREL 1142