Pairwise Alignments

Query, 478 a.a., RNA polymerase sigma-54 factor RpoN from Xanthomonas campestris pv. campestris strain 8004

Subject, 497 a.a., RNA polymerase sigma-54 factor from Pseudomonas putida KT2440

 Score =  376 bits (965), Expect = e-108
 Identities = 213/498 (42%), Positives = 310/498 (62%), Gaps = 23/498 (4%)

Query: 1   MKARLQTSLGQQLVMTPQLRQAIKLLQMSTTELEVEIAEAVETNPLLEWADE-------- 52
           MK  L   +GQQL MTPQL+QAI+LLQ+ST +L+ EI EA+E+NP+LE  ++        
Sbjct: 1   MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEDGEDFDNSD 60

Query: 53  ----------AAHAASEAPVEPSPSASN-EERQRDEPAPAERDDDWSQDELQWTGTGSGG 101
                     AA     +  E + SA N E+ +  E  P E   D + +++  T   S  
Sbjct: 61  PMADNAENKPAAEVQDNSFQESTVSADNLEDGEWSERIPNELPVDTAWEDIYQTSASSLP 120

Query: 102 SFDDDDNGDAAERVAESETLADHLLWQLHLSPLSPRDRQIGAILIDALDEDGYLREPLSA 161
           S +DDD  D   R +  E+L  HLLWQL+L+P+S  DR I   LID+++  GYL + L  
Sbjct: 121 S-NDDDEWDFTTRTSAGESLQSHLLWQLNLAPMSDTDRLIAVTLIDSINGQGYLEDTLEE 179

Query: 162 ILETLNLG-NVDEAEVLTVLHQIQRFDPVGIGARSLGECLALQLQVLDAATPARELALQI 220
           I    +   +++  EV  VLH+IQ+F+P G+GAR+LGECL LQL+ L A TP    A ++
Sbjct: 180 ICAGFDPELDIELDEVEAVLHRIQQFEPAGVGARNLGECLLLQLRQLPATTPWMTEAKRL 239

Query: 221 VAGPLERLPRSGIAGLAHELKRSAADVEQAVQLVRSLDPRPGKQISALSQDTYVVPDCVI 280
           V   ++ L     + L   +K    ++ Q ++LV+SL+PRPG QI + S+  YVVPD ++
Sbjct: 240 VTDFIDLLGSRDYSQLMRRMKIKEDELRQVIELVQSLNPRPGSQIES-SEPEYVVPDVIV 298

Query: 281 WRQRGVWRAALAGRAQPKVTIHRGYEQLIRSCGES-DAGYLRGQLQEARWLLKSLEARGE 339
            +    W   L   A P++ ++  Y   +R    S D  ++R QLQEARW +KSL++R E
Sbjct: 299 RKDSDRWLVELNQEAIPRLRVNPQYAGFVRRADTSADNTFMRNQLQEARWFIKSLQSRNE 358

Query: 340 TLLRVVRCLLQHQAGFLEFGAQALRPLTLREIAGELGLHESTISRAIARKYVRTPRGTIP 399
           TL++V   +++HQ GFL+ G +A++PL L +IA  +G+HESTISR   +KY+ TPRG   
Sbjct: 359 TLMKVATQIVEHQRGFLDHGDEAMKPLVLHDIAEAVGMHESTISRVTTQKYMHTPRGIYE 418

Query: 400 LRSFFASGIDTDSGGEASSTAIQAMIRRLIDAENPRKPLSDAKLADLLKTSGVPVARRTV 459
           L+ FF+S + T  GGE SSTAI+A+I++L+ AEN +KPLSD+K+A LL+  G+ VARRTV
Sbjct: 419 LKYFFSSHVSTSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQVARRTV 478

Query: 460 AKYREAMNISASHERVRI 477
           AKYRE++ I+ S ER R+
Sbjct: 479 AKYRESLGIAPSSERKRL 496