Pairwise Alignments

Query, 478 a.a., RNA polymerase sigma-54 factor RpoN from Xanthomonas campestris pv. campestris strain 8004

Subject, 474 a.a., RNA polymerase sigma-54 factor RpoN from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  288 bits (736), Expect = 4e-82
 Identities = 172/474 (36%), Positives = 265/474 (55%), Gaps = 11/474 (2%)

Query: 4   RLQTSLGQQLVMTPQLRQAIKLLQMSTTELEVEIAEAVETNPLLEWADEAAHAASEAPVE 63
           +L     Q+  ++P+L+ A++LLQMS+ +  + + + +  NP LE  DEAA  A +   +
Sbjct: 3   QLDARAEQRQTLSPRLQHAVRLLQMSSLDFGIVVRDVLGRNPFLEAEDEAAEEARDGGPD 62

Query: 64  PSPSASNEERQRDEPAPAERDDDWSQDELQWTGTGSGGSFDDDDNGDAAERVAESETLAD 123
             P     + Q + PA ++RD  W  D L     G  G         A + V E   L  
Sbjct: 63  TRPD-EGRDAQAEPPAASDRDL-WLADGLAPARQGHDGDVS------ALDFVMEEVPLNA 114

Query: 124 HLLWQLHLSPLSPRDRQIGAILIDALDEDGYLREPLSAILETLNLGNVDEAEVLTV-LHQ 182
           HL  QL    LSPRD  +  +++++LD+DGYLR PL+A+     +      E L + L  
Sbjct: 115 HLHAQLGTMALSPRDLALAGVVVESLDDDGYLRSPLTALCGVAAVTPAATLEDLQIALKL 174

Query: 183 IQRFDPVGIGARSLGECLALQLQVLDAATPARELALQIVAGPLERLPRSGIAGLAHELKR 242
           +Q  +PVG+ AR + ECL+LQL  ++     R +A  IV G L  L    +  +A  L  
Sbjct: 175 VQSLEPVGVAARDVAECLSLQLGEIECPH-LRAMARTIVHGHLHSLAARDVPAMARALGA 233

Query: 243 SAADVEQAVQLVRSLDPRPGKQISALSQDTYVVPDCVIWRQRGVWRAALAGRAQPKVTIH 302
           SA +VE A   +R LDPRPG + S+ SQ  ++VPD ++ + RGVW   L     P+V ++
Sbjct: 234 SAGEVEMACDRIRHLDPRPGWRQSS-SQVNWIVPDVIVRKDRGVWDVQLNAAVVPRVRLN 292

Query: 303 RGYEQLIRSCGESDAGYLRGQLQEARWLLKSLEARGETLLRVVRCLLQHQAGFLEFGAQA 362
             Y QL +    ++   +   LQEARW ++++E R  T+L V + +++ Q  F E+G+ A
Sbjct: 293 EVYAQLFQRHRGAENTEMGAHLQEARWTVRNVEQRFSTILDVSQAIVRRQRHFFEYGSMA 352

Query: 363 LRPLTLREIAGELGLHESTISRAIARKYVRTPRGTIPLRSFFASGIDTDSGGEASSTAIQ 422
           ++PL LREIA E+G+HEST+SR    KY+ TP G   L+ FF+  + + +G   S TAI+
Sbjct: 353 MKPLGLREIADEVGVHESTVSRVTNNKYMATPTGVYELKHFFSRAMVSANGKACSGTAIR 412

Query: 423 AMIRRLIDAENPRKPLSDAKLADLLKTSGVPVARRTVAKYREAMNISASHERVR 476
            +I+ +I++E+  +PLSDA++   L   G+ VARRTV KYR+ + I A   R R
Sbjct: 413 GLIQDIIESESTGQPLSDAEITRQLARQGLTVARRTVTKYRQMLRIDAVGRRKR 466