Pairwise Alignments

Query, 478 a.a., RNA polymerase sigma-54 factor RpoN from Xanthomonas campestris pv. campestris strain 8004

Subject, 542 a.a., RNA polymerase sigma-54 factor RpoN from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  288 bits (737), Expect = 3e-82
 Identities = 188/541 (34%), Positives = 279/541 (51%), Gaps = 69/541 (12%)

Query: 1   MKARLQTSLGQQLVMTPQLRQAIKLLQMSTTELEVEIAEAVETNPLLEWADEAAH----- 55
           +K  L   + Q L +TPQL+Q+I+LLQ+ST E+  E+ + ++ NP LE ++E A      
Sbjct: 1   VKQGLSLRVSQHLALTPQLQQSIRLLQLSTLEMAQEVEQMLDENPFLERSEEIAERETFG 60

Query: 56  --------------AASEAPVEPSPSASNEER---------------QRDEPAPAERD-- 84
                         A +  P  P+P +S+ E                + D   P E    
Sbjct: 61  LEQTDVPVSAGEQIAEAAVPDAPAPLSSSPESTSASTDSGDGDGLEGKLDGATPVEESWE 120

Query: 85  ----DDWSQDELQWTGTG---SGGSFDDDDNGDAAERVAESETLADHLLWQLHLSPLSPR 137
                + S D+ +W G     + GS D D+   AA+      +L DHL  Q     LS  
Sbjct: 121 GDGTVEMSPDDSEWGGDAPARNSGSGDSDETASAADLARAPVSLQDHLHDQARCLRLSDE 180

Query: 138 DRQIGAILIDALDEDGYLREPLSAIL-----------------ETLNLGNVDEAEVLTVL 180
           DR     LI++L++DGYL E LS +                  E L      E  +   L
Sbjct: 181 DRAALYFLIESLNDDGYLEENLSDLADAWLHLSGMPQLAGDPNEALEAREALEQRLAVAL 240

Query: 181 HQIQRFDPVGIGARSLGECLALQLQVLDAATPARELALQIVAGPLERLPRSGIAGLAHEL 240
             +Q  +P G+GAR LGECL LQ+  L     AR  AL I   PLE + +  +  L +  
Sbjct: 241 QLLQHMEPSGVGARDLGECLRLQILELRNTAEARA-ALAICNQPLELMAKRDVKRLCNLC 299

Query: 241 KRSAADVEQAVQLVRSLDPRPGKQISALSQDTYVVPDCVIWRQRGVWRAALAGRAQPKVT 300
                 V  A+ L+  L+P+PG++   + ++  VVPD ++ R    ++  L     P++ 
Sbjct: 300 GLDDETVRAALGLIARLEPKPGRRFVDVERNV-VVPDVIVTRAGRGFKVILNPDVMPRLR 358

Query: 301 IHRGYEQLIR-------SCGESDAGYLRGQLQEARWLLKSLEARGETLLRVVRCLLQHQA 353
           +H  Y   +R       S GE+    ++ +LQEARW +K+++ R +T+LRV   +++ Q 
Sbjct: 359 VHDVYANAMRQNRGGRDSGGEAGHAAMQQRLQEARWFIKNIQQRFDTILRVSSAIVERQR 418

Query: 354 GFLEFGAQALRPLTLREIAGELGLHESTISRAIARKYVRTPRGTIPLRSFFASGIDTDSG 413
            F   G  A+RPL LREIA ELGLHESTISR    KY+ TP GT  L+ FF S + T++G
Sbjct: 419 NFFMHGELAMRPLVLREIADELGLHESTISRVTTAKYMATPFGTYELKYFFGSSLGTETG 478

Query: 414 GEASSTAIQAMIRRLIDAENPRKPLSDAKLADLLKTSGVPVARRTVAKYREAMNISASHE 473
           G ASSTA++A++++ I +E P KPLSD +L+DLL+  G+  ARRTVAKYREA+ I+ ++ 
Sbjct: 479 GNASSTAVRALLKQFIASEEPAKPLSDNQLSDLLREQGIECARRTVAKYREALRIAPANL 538

Query: 474 R 474
           R
Sbjct: 539 R 539