Pairwise Alignments

Query, 478 a.a., RNA polymerase sigma-54 factor RpoN from Xanthomonas campestris pv. campestris strain 8004

Subject, 477 a.a., RNA polymerase, sigma 54 (sigma N) factor from Escherichia coli BL21

 Score =  371 bits (952), Expect = e-107
 Identities = 201/478 (42%), Positives = 298/478 (62%), Gaps = 3/478 (0%)

Query: 1   MKARLQTSLGQQLVMTPQLRQAIKLLQMSTTELEVEIAEAVETNPLLEWADEAAHAASEA 60
           MK  LQ  L QQL MTPQL+QAI+LLQ+ST EL+ E+ +A+E+NPLLE  D      +  
Sbjct: 1   MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQIDTHEEIDTRE 60

Query: 61  PVEPSPSASNEERQRDEPAPAERDDDWSQDELQWTGTGSGGSFDDDDNGDAAERVAESET 120
             + S +    +    +  P E   D S D +   GT SG S D  D+     +   ++T
Sbjct: 61  -TQDSETLDTADALEQKEMPEELPLDASWDTIYTAGTPSGTSGDYIDDELPVYQGETTQT 119

Query: 121 LADHLLWQLHLSPLSPRDRQIGAILIDALDEDGYLREPLSAILETLNLGNVDEAEVLTVL 180
           L D+L+WQ+ L+P S  DR I   ++DA+D+ GYL  PL  ILE++    +D  EV  VL
Sbjct: 120 LQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVPLEDILESMGDEEIDIDEVEAVL 179

Query: 181 HQIQRFDPVGIGARSLGECLALQLQVLDAATPARELALQIVAGPLERLPRSGIAGLAHEL 240
            +IQRFDPVG+ A+ L +CL +QL   D  TP  E A  I++  L+ L       L    
Sbjct: 180 KRIQRFDPVGVAAKDLRDCLLIQLSQFDKTTPWLEEARLIISDHLDLLANHDFRTLMRVT 239

Query: 241 KRSAADVEQAVQLVRSLDPRPGKQISALSQDTYVVPDCVIWRQRGVWRAALAGRAQPKVT 300
           +     +++AV L++SLDPRPG+ I    +  YV+PD ++ +  G W   L   + P++ 
Sbjct: 240 RLKEDVLKEAVNLIQSLDPRPGQSIQT-GEPEYVIPDVLVRKHNGHWTVELNSDSIPRLQ 298

Query: 301 IHRGYEQLIRSC-GESDAGYLRGQLQEARWLLKSLEARGETLLRVVRCLLQHQAGFLEFG 359
           I++ Y  +  +   + D+ ++R  LQ+A+WL+KSLE+R +TLLRV RC+++ Q  F E G
Sbjct: 299 INQHYASMCNNARNDGDSQFIRSNLQDAKWLIKSLESRNDTLLRVSRCIVEQQQAFFEQG 358

Query: 360 AQALRPLTLREIAGELGLHESTISRAIARKYVRTPRGTIPLRSFFASGIDTDSGGEASST 419
            + ++P+ L +IA  + +HESTISR   +KY+ +PRG   L+ FF+S ++T+ GGEASST
Sbjct: 359 EEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELKYFFSSHVNTEGGGEASST 418

Query: 420 AIQAMIRRLIDAENPRKPLSDAKLADLLKTSGVPVARRTVAKYREAMNISASHERVRI 477
           AI+A++++LI AENP KPLSD+KL  LL   G+ VARRTVAKYRE+++I  S++R ++
Sbjct: 419 AIRALVKKLIAAENPAKPLSDSKLTSLLSEQGIMVARRTVAKYRESLSIPPSNQRKQL 476