Pairwise Alignments

Query, 331 a.a., Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) from Xanthomonas campestris pv. campestris strain 8004

Subject, 326 a.a., 23S rRNA pseudouridine(1911,1915,1917) synthase from Escherichia coli BL21

 Score =  343 bits (881), Expect = 3e-99
 Identities = 163/307 (53%), Positives = 219/307 (71%), Gaps = 1/307 (0%)

Query: 16  AVVPDSAAGRRFDAVLAELFPEFSRSRLSEWIKSGDALLDGETA-RPRDTLRGGETVQVQ 74
           A V ++  G+R D  LAE+FP++SRSR+ EWI     L++G+   +P++ + GGE V + 
Sbjct: 9   ATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAIN 68

Query: 75  VVLETQTHAAPQDIPLNVLYEDDHVLVIDKPAGLVVHPGAGNPDGTLVNALLFRDPNLAA 134
             +E +    PQDIPL+++YED+ +++I+KP  LVVHPGAGNPDGT++NALL   P +A 
Sbjct: 69  AEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIAD 128

Query: 135 VPRAGVVHRLDKDTSGVMVVARTLQAQTALVEQLSARDVHRQYLAVVVGALVSGGTADAP 194
           VPRAG+VHRLDKDT+G+MVVA+T+ AQT LVE L  R++ R+Y AV +G + +GGT D P
Sbjct: 129 VPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEP 188

Query: 195 IDRHPRDRLKMAVRDDGRDAVTHYRLRERFRAHTALECRLETGRTHQIRVHMAHLKSPIV 254
           I RHP  R  MAV   G+ AVTHYR+ E FR HT L  RLETGRTHQIRVHMAH+  P+V
Sbjct: 189 ISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAHITHPLV 248

Query: 255 GDPLYGGALKLPKGATDTLVAELRGFKRQALHAETLEFLHPVSGEPIRASAPVPEDLQRL 314
           GDP+YGG  + PKGA++  ++ LR F RQALHA  L   HP+SG  +   AP+P+D+  L
Sbjct: 249 GDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVEL 308

Query: 315 MSALRED 321
           +  +R D
Sbjct: 309 IEVMRAD 315