Pairwise Alignments

Query, 346 a.a., Permease from Xanthomonas campestris pv. campestris strain 8004

Subject, 357 a.a., membrane protein from Pseudomonas simiae WCS417

 Score =  104 bits (260), Expect = 3e-27
 Identities = 97/333 (29%), Positives = 152/333 (45%), Gaps = 29/333 (8%)

Query: 26  LWALSGLLLMVFGAVVVAVLLRALASWVTRYT--PLSD-----GMALGLVVVVVAVGFT- 77
           +W    +LL VF  ++ ++L   L + +  Y   P+ D     G++    VV V   FT 
Sbjct: 8   VWLGGIVLLCVFVFLLHSILTPFLVALLLAYLFDPVVDRLEKAGLSRTWGVVAVFALFTL 67

Query: 78  ---ALLWLFGSQLATELGALQRTLPQA----------WARFHDWVAAG-----PLGPALE 119
              AL+ +    LA +L  L    PQ           WA+    +A G      +  A+ 
Sbjct: 68  IITALVLVLVPMLAKQLFRLYELAPQMLDWLQHTAMPWAQAKLGLADGFWKFDKVKAAIS 127

Query: 120 ELTRQAPARVSNLAPRAGAFALSITGGVANLFLVLAGAVYLAAQPQLYRRGVLLLFPVQV 179
           E   Q    V  +  +A A +L++ G + NL L+   A YL     L    +  L P   
Sbjct: 128 EHMGQTTDIVGVVLSQATASSLALIGWLTNLVLIPVVAFYLLRDWDLMMAKIRSLLPRDR 187

Query: 180 RATMDDAVRASGTALRLWLRGQLLAMVVVGALTGLGLWALGIPGALALGIIAGLLDFVPI 239
              +          L  ++RGQLL M+ +G +   GL A+G+   L +G+IAGL   VP 
Sbjct: 188 EERIVSLAEECHEVLGAFVRGQLLVMLALGIIYAAGLMAIGLELGLLIGLIAGLAAIVPY 247

Query: 240 VGPIL---AAIPAILLGFTVSPQMALATAALFVVVQQIEGNILLPLIQQRTVDLPPVLLL 296
           +G ++   AA+ A L  F       L   A+F+V Q +EG +L PL+    + L PV ++
Sbjct: 248 MGFVIGIGAALVAGLFQFGGDLYPMLGIVAVFMVGQALEGMVLTPLLVGDRIGLHPVAVI 307

Query: 297 FSLFGIGTLLGPAGVLLAAPLTVVAFVLVKRLY 329
           F++   G L G  G+LLA P+  V  VLV+ ++
Sbjct: 308 FAILAGGELFGFTGILLALPVAAVIMVLVRHVH 340