Pairwise Alignments

Query, 481 a.a., penicillin-binding protein from Pseudomonas simiae WCS417

Subject, 487 a.a., serine-type D-Ala-D-Ala carboxypeptidase from Vibrio cholerae E7946 ATCC 55056

 Score =  124 bits (311), Expect = 7e-33
 Identities = 123/460 (26%), Positives = 195/460 (42%), Gaps = 44/460 (9%)

Query: 42  GATVSLMVRDARSGSTLYQHNSRTRLIPASNLKLLTTAAAMDVLGPQYRFSTQLLSNGTL 101
           GA  SL++ D        + N+     PAS  K+LT  AA   LG ++RF T L+ +G  
Sbjct: 44  GARYSLLIEDVALQQNTLELNTHLYYPPASTQKILTALAAKLELGDKFRFHTDLMRSGQ- 102

Query: 102 QGERLTGNLYLKGLGDPTTQFADYQALAAQLAAQGVRQVQGDLVFDDTFFDAERLGVDWA 161
                  +  ++  GDPT   AD   L   + AQ   +++GDL  D++ F      V W 
Sbjct: 103 -------DWIIRFSGDPTLTTADLTTLLKAMKAQSGGRIEGDLWLDNSVFSGYERAVGWP 155

Query: 162 HDDESTYYGAQISALTVSPN-------TDFDAGT-LLVTAKAPSGVGQPVSVVVSPSTDY 213
            D     Y A  SA+ +  N       T+    T + V    P  V      V     + 
Sbjct: 156 WDILGVCYSAPASAINLDANCIQASIYTEPQGKTRVYVPEHYPVHVQSQAISVTQSEQES 215

Query: 214 VQLSNRAVSGPGNNYGITRQHGTNLLQLTGTLAPGKQSRQWVSVWEPTQLVANLFEQALA 273
           +       + P N+Y +        L L     P K + Q   ++  TQ V     + L+
Sbjct: 216 LLCDLELTATPENHYTL-----DGCLALRDKPLPLKFAVQDTGIY--TQRVV---YRLLS 265

Query: 274 QQGIQVLGRRVIGGASPVTARVLAEHQSAPLQALLTPLLKLSNNNMSEAFLKAMG-RKAS 332
           Q  I++ G+  +G A+   A+ +A H S PL  LL  +L+ S+N +++   KA+G R  S
Sbjct: 266 QLNIELKGKIKVGKANTKQAQKIASHHSQPLPVLLKTMLQESDNLIADTLTKALGHRFYS 325

Query: 333 NAGTAQAGVAAVAD-FMRRQGLDPMTLSQVDGSGLSRRNLVSSQNLTDLLLATAKQPWFE 391
             G+   G  A+   F  R G+        DGSGLSR N +  Q + + L    +     
Sbjct: 326 QPGSFTNGTQAIKQIFYSRTGISLEDTQLADGSGLSRNNRMRPQVMLETLRYLYQHEAEL 385

Query: 392 AWYNALPIAGNTDRISGGSLRYR--LRGTPAENNLHAKTGSMAGVSSLSGYITDAQGRRL 449
                LP AG +     G+L+YR  +R       + AK+GS+ G  +++G++ D   R  
Sbjct: 386 GLIAMLPSAGES-----GTLQYRRSMRAPQISGQIKAKSGSLYGTYNMAGFVMDENQRPK 440

Query: 450 V---------FSMISNNYLSTAAPIRALENRVALALVQWH 480
                     F   SN  ++   PI   E ++   L+Q++
Sbjct: 441 TLFVQFVTDYFPPRSNPEVAVEPPIIQFETQLYQELIQFN 480