Pairwise Alignments

Query, 481 a.a., penicillin-binding protein from Pseudomonas simiae WCS417

Subject, 507 a.a., penicillin-binding protein 4 (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  180 bits (457), Expect = 9e-50
 Identities = 129/435 (29%), Positives = 221/435 (50%), Gaps = 23/435 (5%)

Query: 30  TLEQLLADPALNGATVSLMVRDARSGSTLYQHNSRTRLIPASNLKLLTTAAAMDVLGPQY 89
           TL+Q ++D A + + ++L+  D  +   LY   + T  IPAS  K+LT   A+  LGP++
Sbjct: 41  TLDQQMSDIAPSHSQIALLAHDMSNDKQLYSQQADTLFIPASTQKVLTAVTALAALGPEF 100

Query: 90  RFSTQLLSNGTLQGERLTGNLYLKGLGDPTTQFADYQALAAQLAAQGVRQVQGDL-VFDD 148
            + T L S+  ++   + G++YL+  GDPT    D +AL AQL   G+++++G L +  D
Sbjct: 101 SYVTDLWSDAPIRQGHVEGSVYLRFSGDPTLTHEDLKALFAQLQKLGIKRIEGHLYLVGD 160

Query: 149 TFFDAERLGVDWAHDDESTYYGAQISALTVSPNTDFDAGTLLVTAKAPSGVGQPVSVVVS 208
                +  G  W  DD    + A +S+  ++ N  +           PS   Q   V +S
Sbjct: 161 KQEQLQAPG--WVWDDLGICFAAPVSSYIINQNCVYG-------QFVPSSAKQTSRVTLS 211

Query: 209 PSTDYVQLSNRAVSGPGNNYGITR----QHGTNLLQLTGTLAPGKQSRQWVSVWEPTQLV 264
            ++  V +S+ A+  P  N+   +    +   N   L G     +     +++ +P +  
Sbjct: 212 ANSYGVNVSSDAIFSPQANHDFCQLDLVRLSQNQYHLRGCYPGSEAIPLAIAISDPQKFA 271

Query: 265 ANLFEQALAQQGIQVLGRRVIGGASPVTARVLAEHQSAPLQALLTPLLKLSNNNMSEAFL 324
            +     L  + I + G+  IG   P  A+++A H+SAPL  LL  +L  S+N ++++  
Sbjct: 272 IDTLTATLKGK-ISLSGKVKIGHDIPDKAKLIASHRSAPLPELLKTMLLKSDNLIADSLF 330

Query: 325 KAMGRK-ASNAGTAQAGVAAVADFMRRQGLDPMTLSQVDGSGLSRRNLVSSQNLTDLLLA 383
           K +G+      G+   G AA+   +   G+D    + VDGSGLSR NL+S++ L D+L  
Sbjct: 331 KRVGQDYYKTQGSFTYGAAAMRHILTELGIDLTNANIVDGSGLSRYNLLSAKQLADVLTL 390

Query: 384 TAKQPWFEAWYNALPIAGNTDRISGGSLRYRLRGT--PAENNLHAKTGSMAGVSSLSGYI 441
             +   F +  ++LP AG       G+L+YR   T  P +N + AKTGSM GV++L+G+I
Sbjct: 391 MYQDARFHSLIDSLPEAG-----VSGTLKYRQGYTQPPLKNRVFAKTGSMQGVANLAGFI 445

Query: 442 TDAQGRRLVFSMISN 456
              Q R ++F ++ N
Sbjct: 446 RIPQQRDILFVVLEN 460