Pairwise Alignments

Query, 365 a.a., amino acid ABC transporter permease from Pseudomonas simiae WCS417

Subject, 396 a.a., Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine from Synechococcus elongatus PCC 7942

 Score =  254 bits (650), Expect = 2e-72
 Identities = 148/398 (37%), Positives = 225/398 (56%), Gaps = 76/398 (19%)

Query: 19  PMAWMRANLFSSWLNTLLTLLAFYLIYLVVPPILSWAIIDANWVGTTRADCTKEGACWVF 78
           P+AW+R NLFSSWLN+ +TLL   +I  VV  +  W   +A W                 
Sbjct: 14  PIAWLRQNLFSSWLNSAITLLLVVIIVTVVGRLGLWITTEARWT---------------V 58

Query: 79  IQQRFGQFMYGYYPGDLRWRVDLTVWLAIV--------GVAPLFISRFQRKAVYG----- 125
           +   +  F  G YP   +WR  L +WL ++        G       R+QR++++G     
Sbjct: 59  LVDNWTLFFVGRYPAAEQWR--LWLWLGLLSPTLGLTWGCLATGSHRWQRRSLWGWAGLA 116

Query: 126 ---------------------------------------LGFL-----VLYPIIAFFLLH 141
                                                  L FL     VL+ ++  +LL 
Sbjct: 117 AAIAGIPLPWFPHKLGLAAIAATVPAASWLAQRCRGQAWLRFLPTLWGVLF-LVGLWLLQ 175

Query: 142 GGIFGLTNVATSQWGGLMLTLVIATVGIAGALPLGIMLALGRRSNMPAIRVVCVTFIEFW 201
           GG+ GL  V+++ W GL+LTL  A + +  +LPLGI+LALGR+S++PAIR + VT+IE +
Sbjct: 176 GGL-GLRPVSSNDWSGLLLTLATALISMVCSLPLGILLALGRQSSLPAIRWLSVTYIELF 234

Query: 202 RGVPLITVLFMSSVMLPLFLPEGMGIDKLLRALIGVILFQSAYVAEVVRGGLQAIPKGQY 261
           RG+PL+T+LF   VM+PL L     ID++LRA++G+ +F SAY+AE VRGGLQAIP+GQ+
Sbjct: 235 RGLPLVTILFFGQVMVPLMLDSEWRIDRILRAIVGLTIFLSAYLAETVRGGLQAIPQGQF 294

Query: 262 EAAAAMGLGYWRSMGLVILPQALKMVIPGIVNTFIALFKDTSLVIIIGLFDLLNSVKQAA 321
           EAAAA+GL  +++   ++LPQAL++ IP IV  F+ L +DT+L+ I+GL +LL   +   
Sbjct: 295 EAAAALGLNLFQTYRFIVLPQALRISIPAIVGLFLNLLQDTTLLSIVGLLELLGISRSIL 354

Query: 322 ADPKWLGMATEGYVFAALVFWIFCFGMSRYSIHLEHKL 359
           A+P +LG   E Y+F  +++W+ C+G+++ S  LE +L
Sbjct: 355 ANPAYLGRYAEVYLFLGVLYWLCCYGLAQLSRRLEQRL 392