Pairwise Alignments

Query, 365 a.a., amino acid ABC transporter permease from Pseudomonas simiae WCS417

Subject, 596 a.a., amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  136 bits (343), Expect = 1e-36
 Identities = 77/204 (37%), Positives = 121/204 (59%), Gaps = 4/204 (1%)

Query: 156 GGLMLTLVIATVGIAGALPLGIMLALGRRSNMPAIRVVCVTFIEFWRGVPLITVLFMSSV 215
           GGL  +L++A + I+ +  +G+++ +GR S+    R+ C+ +IE  RG PLI V+F    
Sbjct: 388 GGLAYSLLMAVIAISVSFFIGLVVGIGRTSDNRICRIPCLLYIELIRGNPLIIVIFWIYF 447

Query: 216 MLPLFLPEGMGIDKLLRALIGVILFQSAYVAEVVRGGLQAIPKGQYEAAAAMGLGYWRSM 275
            +P+       +     A I + LF  AY+AE+VR G+Q IP GQ EAA + GL + ++M
Sbjct: 448 FIPVLFNTFFNV--FWSATIALTLFTGAYLAEIVRAGIQNIPAGQVEAAYSTGLTFVQTM 505

Query: 276 GLVILPQALKMVIPGIVNTFIALFKDTSLVIIIGLFDLLNSVKQAAADPKWLGMATEGYV 335
             +ILPQALK +IP IV  FIA+FKDTSL  ++G+ +L  +      + + +    E Y 
Sbjct: 506 RRIILPQALKQMIPAIVGQFIAIFKDTSLAFVLGVLEL--TFVAQGINNRLMVYPMEIYG 563

Query: 336 FAALVFWIFCFGMSRYSIHLEHKL 359
             A +++I C+ MS Y+  LE +L
Sbjct: 564 TVAFLYFICCWSMSVYAARLERRL 587



 Score =  104 bits (259), Expect = 7e-27
 Identities = 59/163 (36%), Positives = 95/163 (58%), Gaps = 6/163 (3%)

Query: 157 GLMLTLVIATVGIAGALPLGIMLALGRRSNMPAIRVVCVTFIEFWRGVPLITVLFMSSVM 216
           GL +T+ I+ +  A AL LG +L + R S    +R+     +EF+R  PL+  LF     
Sbjct: 60  GLGVTVRISLISSALALGLGTVLGIARLSLFAPLRLTATAVVEFFRNTPLLVQLFFWYFA 119

Query: 217 LPLFLPEGM------GIDKLLRALIGVILFQSAYVAEVVRGGLQAIPKGQYEAAAAMGLG 270
            P  LPE +      G  +   A IG+ ++ SA++AEV+R GLQ+IPKG  EAA + GL 
Sbjct: 120 FPAILPENIRELLFTGNFEFWCATIGLSVYTSAFMAEVIRAGLQSIPKGLLEAAYSSGLN 179

Query: 271 YWRSMGLVILPQALKMVIPGIVNTFIALFKDTSLVIIIGLFDL 313
           Y + +  +ILP A + +IP + + F+   K++SL +++G+ +L
Sbjct: 180 YVQVLRTIILPMAFRAIIPPLGSEFLNNMKNSSLAMVVGVAEL 222